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Daniel John RigdenEditorFrom Protein Structureto Function withBioinformatics
Page 7 and 8: Prefaceviiof multiple methods withi
Page 9 and 10: xContents2.2.1 Knowledge-Based Pote
Page 11 and 12: xiiContents5.5.4 Combination of Inf
Page 13 and 14: xivContents9.4.2 Elastic Network Mo
Page 15 and 16: Chapter 1Ab Initio Protein Structur
Page 17 and 18: 1 Ab Initio Protein Structure Predi
Page 39 and 40: 28 L.A. Kelley2.1.1 The Importance
Page 41 and 42: 30 L.A. Kelleymodelling chapter of
Page 43 and 44: 32 L.A. Kelleyalways unique) struct
Page 45 and 46: 34 L.A. Kelleyijf (l)=kf(i, j,k,l)M
Page 47 and 48: 36 L.A. Kelleyto limit the position
Page 49 and 50: 38 L.A. Kelley(Lathrop 1999) of the
Page 51 and 52: 40 L.A. KelleyFig. 2.4 Schematic re
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42 L.A. Kelleyperformance at CASP4
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44 L.A. KelleyAs an example, the Na
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46 L.A. Kelleyin ever greater detai
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48 L.A. Kelleyconsistency is analyz
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50 L.A. KelleyTable 2.2 Popular web
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52 L.A. KelleyIt is unclear to what
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54 L.A. KelleyLathrop RH, Smith TF
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Chapter 3Comparative Protein Struct
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3 Comparative Protein Structure Mod
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Chapter 4Membrane Protein Structure
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4 Membrane Protein Structure Predic
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114 P. Tompaproteins lack a well-de
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116 P. Tompa5.2.3 Low Sequence Comp
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118 P. TompaFig. 5.1 Charge-hydropa
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120 P. Tompabeen developed into sev
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122 P. Tompa5.3.8 Comparison of Dis
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124 P. TompaTable 5.2 Classificatio
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126 P. TompaThe final functional ca
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128 P. Tompa5.5 Prediction of the F
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130 P. Tompa(see Fig. 5.4). Althoug
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132 P. Tompafied by that function w
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134 P. TompaSequence-independence w
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136 P. TompaCox CJ, Dutta K, Petri
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138 P. TompaMark WY, Liao JC, Lu Y,
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140 P. TompaVacic V, Oldfield CJ, M
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144 B.H. Dessailly and C.A. Orengow
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146 B.H. Dessailly and C.A. Orengot
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148 B.H. Dessailly and C.A. Orengoa
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150 B.H. Dessailly and C.A. OrengoF
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152 B.H. Dessailly and C.A. Orengo6
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154 B.H. Dessailly and C.A. Orengo6
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156 B.H. Dessailly and C.A. OrengoF
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158 B.H. Dessailly and C.A. OrengoP
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160 B.H. Dessailly and C.A. OrengoA
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162 B.H. Dessailly and C.A. Orengoh
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164 B.H. Dessailly and C.A. OrengoH
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166 B.H. Dessailly and C.A. OrengoW
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168 N.J. Burgoyne and R.M. Jacksone
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170 N.J. Burgoyne and R.M. JacksonT
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172 N.J. Burgoyne and R.M. Jacksonc
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174 N.J. Burgoyne and R.M. Jackson7
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176 N.J. Burgoyne and R.M. JacksonF
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178 N.J. Burgoyne and R.M. Jacksono
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180 N.J. Burgoyne and R.M. Jackson7
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182 N.J. Burgoyne and R.M. Jacksonh
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184 N.J. Burgoyne and R.M. Jacksonc
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186 N.J. Burgoyne and R.M. JacksonL
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188 E.C. Meng et al.Structure-Based
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190 E.C. Meng et al.not previously
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192 E.C. Meng et al.Fig. 8.1 Active
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194 E.C. Meng et al.Table 8.1 Web s
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196 E.C. Meng et al.used in matchin
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198 E.C. Meng et al.within subtilis
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200 E.C. Meng et al.Table 8.2 Web s
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202 E.C. Meng et al.Oldfield analyz
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204 E.C. Meng et al.are compared, p
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206 E.C. Meng et al.The Common Stru
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208 E.C. Meng et al.proteins sharin
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210 E.C. Meng et al.8.5 Docking for
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212 E.C. Meng et al.8.6 DiscussionA
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214 E.C. Meng et al.Bartlett GJ, Bo
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216 E.C. Meng et al.Porter CT, Bart
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218 M.B. Kubitzki et al.nano- to mi
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220 M.B. Kubitzki et al.periodic bo
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222 M.B. Kubitzki et al.Fig. 9.2 Nu
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224 M.B. Kubitzki et al.Fig. 9.4 Pr
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226 M.B. Kubitzki et al.Grubmüller
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228 M.B. Kubitzki et al.This ineffi
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230 M.B. Kubitzki et al.tion of the
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232 M.B. Kubitzki et al.( )( − )C
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234 M.B. Kubitzki et al.conformatio
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236 M.B. Kubitzki et al.challenge d
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238 M.B. Kubitzki et al.(Brooks and
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240 M.B. Kubitzki et al.Fig. 9.11 S
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242 M.B. Kubitzki et al.that contai
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244 M.B. Kubitzki et al.method. In
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246 M.B. Kubitzki et al.Duda RO, Ha
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248 M.B. Kubitzki et al.Müller CW,
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Chapter 10Integrated Servers for St
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10 Integrated Servers for Structure
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Chapter 11Case Studies: Function Pr
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11 Function Predictions of Structur
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294 I.A. Cymerman et al.types, scie
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296 I.A. Cymerman et al.and improve
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298 I.A. Cymerman et al.The collect
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300 I.A. Cymerman et al.larity case
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302 I.A. Cymerman et al.performance
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304 I.A. Cymerman et al.alignment r
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306 I.A. Cymerman et al.proteins wi
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308 I.A. Cymerman et al.A recent ex
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310 I.A. Cymerman et al.An early ex
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312 I.A. Cymerman et al.Fig. 12.6 S
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314 I.A. Cymerman et al.12.5 What N
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316 I.A. Cymerman et al.Lu L, Lu H,
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IndexAAb initio modelling, 3, 6, 8,
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Index 321Fragment search approach t
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Index 323Predicting protein-protein
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