HPG Variant - Bioinformatics and Genomics Department at CIPF

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HPG VariantGWAS Analysis (III)Coming soon...AssociationLinear modelLogistic modelLOHAnd more!20

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HPG VariantGWAS Analysis (III)Coming soon...AssociationLinear modelLogistic modelLOHAnd more!20

HPG VariantVariant CallingProcess of searching for variants in alignedsequencesBAM input → VCF outputCurrent solutions:GATK: JavaSAMtools mPileup: CSequential software → running for hoursStatus: Porting GATK pipeline (see [2])21

Page 4 and 5: IntroductionData generation pipelin
Page 7 and 8: HPC technologyOpenMPAPI for sharedm
Page 10: HPG VCF ToolsUtilities for VCF file
Page 14 and 15: HPG VCF ToolsHands-on demo stage 2!
Page 16 and 17: HPG VariantVariant Effect (I)A vari
Page 18 and 19: HPG VariantGWAS Analysis (I)Genomic
Page 22 and 23: HPG VariantHands-on demo final stag
Page 24: References1) A map of human genome

HPG Variant - Bioinformatics and Genomics Department at CIPF

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