FA 5 Progress Report WV-INBRE - Joan C. Edwards School of ...
FA 5 Progress Report WV-INBRE - Joan C. Edwards School of ... FA 5 Progress Report WV-INBRE - Joan C. Edwards School of ...
Program Director/Principal Investigator (Last, First, Middle): Rankin, Gary O 82Core Staff: The Genomics Core provides centralized services that would not be available to smaller labs andtraining in genomic methods of analysis. These services position research project investigators to efficientlygather critical data and analyze it with the most up to date statistical tools. Dr. Donald Primerano oversees allservices of the Genomics Core Facility, guides new protocol development and discuss proposed projectswith individual investigators. Dr. Goran Boskovic performs all microarray analyses and next generationsequencing (NGS) and library construction; he also provides training in the use of Ingenuity PathwayAnalysis software. Dr. James Denvir advises on experimental design and performs microarray and NGS dataanalyses. Conventional DNA sequencing, genotyping and genomic DNA banking are carried out by Dr. JunFan. Dr. Ivana Yang at the University of Colorado serves as an external advisor to the Genomics Core.Equipment and Lab Space: The Genomics Core is equipped with (1) an Illumina HiSeq1000 next generationsequencer with 300 Gigabase/run throughput (acquired in March 2011), (2) an Agilent Microarray Scannerwith 2 micron resolution, (3) an Agilent Hybridization Station, (4) 2 Model 7000 Sequence Detection Systems(real-time PCR), (5) a Step One Plus Sequence Detection System, (6) two Agilent Model 2100BioAnalyzers, (7) two NanoDrop spectrophotometers, (8) an Applied Biosystems 3130 Genetic Analyzer,and (9) a Luminex 100 protein detection system. All services are available to all WV-INBRE, COBRE, MUand WVU investigators. Real-time thermal cyclers and spectrophotometers are available on a sign-upbasis. The HiSeq1000 will support whole genome, whole exome, whole transcriptome (RNA-Seq) andchromatin (Chip-Seq) studies.In support of the NGS service, we have also acquired a Linux Server for data analysis and storage (40TB), a3rd Agilent BioAnalyzer for DNA/RNA quality control, an Invitrogen E-gel System for DNA/RNA purification,and a Covaris DNA Shearing System for genomic library preparation. Investigators may learn about the MUGenomics services through its web site (http://musom.marshall.edu/genomics/). The Genomics Core islocated in the Robert C. Byrd Biotechnology Science Center and has sufficient space (1200 sq ft) to provideall services.Administrative Issues: (i) All investigators must meet with the Genomics Core Staff to discuss NGS ormicroarray experimental design. Issues such as expected data, methods of analysis, biological replicates,and cost will also be discussed. (ii) Prioritization of NGS and microarray requests. We will accommodatepeaks in microarray and NGS demand by handling requests from INBRE and CTSA investigators on afirst-come first-serve basis. The Genomics Core will have discretion in determining the order of completionof experiments.Users Unique # Fees Charged Fees Paid by CenterFaculty/Post Doctorate/Staff 8 Yes YesGraduate Students 12 Yes YesUndergraduate Students 1 Yes YesPHS 2590 (Rev. 06/09)Continuation Format Page
Program Director/Principal Investigator (Last, First, Middle): Rankin, Gary O 83STUDENT ACTIVITY PARTICIPATIONPHS 2590 (Rev. 06/09)Continuation Format Page
- Page 31 and 32: Program Director/Principal Investig
- Page 33 and 34: Program Director/Principal Investig
- Page 35 and 36: Program Director/Principal Investig
- Page 37 and 38: Program Director/Principal Investig
- Page 39 and 40: Program Director/Principal Investig
- Page 41 and 42: Program Director/Principal Investig
- Page 43 and 44: Program Director/Principal Investig
- Page 45 and 46: Program Director/Principal Investig
- Page 47 and 48: Program Director/Principal Investig
- Page 49 and 50: Program Director/Principal Investig
- Page 51 and 52: Program Director/Principal Investig
- Page 53 and 54: Program Director/Principal Investig
- Page 55 and 56: Program Director/Principal Investig
- Page 57 and 58: Program Director/Principal Investig
- Page 59 and 60: Program Director/Principal Investig
- Page 61 and 62: Program Director/Principal Investig
- Page 63 and 64: Program Director/Principal Investig
- Page 65 and 66: Program Director/Principal Investig
- Page 67 and 68: Program Director/Principal Investig
- Page 69 and 70: Program Director/Principal Investig
- Page 71 and 72: Program Director/Principal Investig
- Page 73 and 74: Program Director/Principal Investig
- Page 75 and 76: Program Director/Principal Investig
- Page 77 and 78: Program Director/Principal Investig
- Page 79 and 80: Program Director/Principal Investig
- Page 81: Program Director/Principal Investig
- Page 85 and 86: Program Director/Principal Investig
- Page 87 and 88: Program Director/Principal Investig
- Page 89 and 90: Program Director/Principal Investig
- Page 91 and 92: Program Director/Principal Investig
- Page 93 and 94: Program Director/Principal Investig
- Page 95 and 96: Program Director/Principal Investig
- Page 97 and 98: Program Director/Principal Investig
- Page 99 and 100: Program Director/Principal Investig
- Page 101 and 102: Program Director/Principal Investig
- Page 103 and 104: Program Director/Principal Investig
- Page 105 and 106: Program Director/Principal Investig
- Page 107 and 108: Program Director/Principal Investig
- Page 109 and 110: Program Director/Principal Investig
- Page 111 and 112: Program Director/Principal Investig
- Page 113 and 114: Program Director/Principal Investig
- Page 115 and 116: Program Director/Principal Investig
- Page 117 and 118: Program Director/Principal Investig
- Page 119 and 120: Program Director/Principal Investig
- Page 121 and 122: Program Director/Principal Investig
- Page 123 and 124: Program Director/Principal Investig
- Page 125 and 126: Program Director/Principal Investig
- Page 127 and 128: Program Director/Principal Investig
- Page 129 and 130: Program Director/Principal Investig
- Page 131 and 132: Program Director/Principal Investig
Program Director/Principal Investigator (Last, First, Middle): Rankin, Gary O 83STUDENT ACTIVITY PARTICIPATIONPHS 2590 (Rev. 06/09)Continuation Format Page