Package 'metagenomeSeq' - Bioconductor

cumNormStat 9cumNormStatCumulative sum scaling percentile selectionDescriptionCalculates the percentile for which to sum counts up to and scale by. cumNormStat might bedeprecated one day.UsagecumNormStat(obj, qFlag = TRUE, pFlag = FALSE, rel = 0.1, ...)ArgumentsobjqFlagpFlagrelA MRexperiment object.Flag to either calculate the proper percentile using R’s step-wise quantile functionor approximate function.Plot the relative difference of the median deviance from the reference.Cutoff for the relative difference from one median difference from the referenceto the next... Applicable if pFlag == TRUE. Additional plotting parameters.ValuePercentile for which to scale dataSee AlsofitZig cumNorm cumNormStatFastExamplesdata(mouseData)p = round(cumNormStat(mouseData,pFlag=FALSE),digits=2)