12.07.2015 Views

MacroModel Reference Manual - ISP

MacroModel Reference Manual - ISP

MacroModel Reference Manual - ISP

SHOW MORE
SHOW LESS
  • No tags were found...

You also want an ePaper? Increase the reach of your titles

YUMPU automatically turns print PDFs into web optimized ePapers that Google loves.

<strong>MacroModel</strong> <strong>Reference</strong> <strong>Manual</strong>Appendix BAppendix B: <strong>MacroModel</strong> Benchmark SuitesA benchmark suite is now included in the <strong>MacroModel</strong> distribution for use in comparing therelative speed of different releases or of the same release on different platforms. The benchmarksuite contains a number of individual tests which collectively exercise <strong>MacroModel</strong>calculations involving minimizations and conformational searches on small and protein-sizedmolecules.To run the benchmark copy the directory:$SCHRODINGER/macromodel-vversion/test/benchmarksto a suitable location. In the new benchmarks directory type:./do > run_log &At the end of the calculation a file called Summary.machine_name is written that contains thetimes for the various tests performed. There is also a README file in the benchmark directorythat provides a brief description of the various benchmarks.Note: Schrödinger, LLC will not provide benchmark results. If you write a request for suchresults to the independently administered <strong>MacroModel</strong> mailing list atmmodlist@chem.iupui.edu another <strong>MacroModel</strong> customer might be able to helpyou.<strong>MacroModel</strong> 9.7 <strong>Reference</strong> <strong>Manual</strong> 179

Hooray! Your file is uploaded and ready to be published.

Saved successfully!

Ooh no, something went wrong!