View - ResearchGate

Estimating Protein Function Using Protein–Protein Relationships 12710. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. (1990) Basiclocal alignment search tool. J. Mol. Biol. 215, 403–410.11. Lopez, R., Silventoinen, V., Robinson, S., Kibria, A., and Gish, W. (2003) WU-Blast2server at the European Bioinformatics Institute. Nucleic Acids Res. 31, 3795–3798.12. Wu, J., Kasif, S., and DeLisi, C. (2003). Identification of functional links betweengenes using phylogenetic profiles. Bioinformatics 19, 1524–1530.13. Shannon, C. E. (1948) A mathematical theory of communication. Bell Syst. Tech.J. 27, 379–423; 623–656.14. Krober, B. T. M., Farber, R. M., Wolpert, D. H., and Lapedes, A. S. (1993)Covariation of mutations in the V3 loop of human immunodeficiency virus typeI envelope protein: an information theoretic analysis. Proc. Nat. Acad. Sci. USA90, 7176–7180.15. Huynen, M., Snel, B., Lathe, W., and Bork, P. (2000) Predicting protein functionby genomic context: quantitative evaluation and qualitative inferences. GenomeRes. 10, 1204–1210.16. Verjovsky Marcotte, C. J. and Marcotte, E. M. (2002) Predicting functional linkagesfrom gene fusions with confidence. Appl. Bioinforma. 1, 1–8.17. Kanehisa, M., Goto, S., Hattori, M., et al. (2006) From genomics to chemicalgenomics: new developments in KEGG. Nucleic Acids Res. 34, D354–D357.18. Jansen, R., Yu, H., Greenbaum, D., et al. (2003) A Bayesian networks approach forpredicting protein-protein interactions from genomic data. Science 302, 449–453.19. Adai, A. T., Date, S. V., Wieland, S., and Marcotte, E. M. (2004) LGL: Creatinga map of protein function with an algorithm for visualizing very large biologicalnetworks. J. Mol. Biol. 340, 179–190.