Novel genetic and epigenetic alterations in ... - Ous-research.no
Novel genetic and epigenetic alterations in ... - Ous-research.no Novel genetic and epigenetic alterations in ... - Ous-research.no
Journal of Translational MedicineBioMed CentralResearchOpen AccessHypermethylated MAL gene – a silent marker of early colontumorigenesisGuro E Lind 1,2 , Terje Ahlquist 1,2 , Matthias Kolberg 1,2 , Marianne Berg 1,2 ,Mette Eknæs 1,2 , Miguel A Alonso 3 , Anne Kallioniemi 4 , Gunn I Meling 5,6 ,Rolf I Skotheim 1,2 , Torleiv O Rognum 7 , Espen Thiis-Evensen 8 andRagnhild A Lothe* 1,2Address: 1 Department of Cancer Prevention, Institute for Cancer Research, The Norwegian Radium Hospital, Rikshospitalet University Hospital,Oslo, Norway, 2 Centre for Cancer Biomedicine, University of Oslo, Oslo, Norway, 3 Centro de Biología Molecular Severo Ochoa, Consejo Superiorde Investigaciones Científicas y Universidad Autónoma de Madrid, Madrid, Spain, 4 Laboratory of Cancer Genetics, Institute of MedicalTechnology, Tampere University Hospital and University of Tampere, Tampere, Finland, 5 Department of Urology, Akershus University Hospital,Lørenskog, Norway, 6 Faculty of Medicine, University of Oslo, Oslo, Norway, 7 Institute of Forensic Medicine, Rikshospitalet University Hospital,Oslo, Norway and 8 Medical Department, Rikshospitalet University Hospital, Oslo, NorwayEmail: Guro E Lind - Guro.Elisabeth.Lind@rr-research.no; Terje Ahlquist - terje.c.ahlquist@rr-research.no;Matthias Kolberg - matthias.kolberg@rr-research.no; Marianne Berg - marianne.berg@rr-research.no; Mette Eknæs - metteek@rr-research.no;Miguel A Alonso - maalonso@cbm.uam.es; Anne Kallioniemi - anne.kallioniemi@uta.fi; Gunn I Meling - gi@meling.net;Rolf I Skotheim - rolf.i.skotheim@rr-research.no; Torleiv O Rognum - t.o.rognum@medisin.uio.no; Espen Thiis-Evensen - Espen.Thiis-Evensen@rikshospitalet.no; Ragnhild A Lothe* - rlothe@rr-research.no* Corresponding authorPublished: 17 March 2008Journal of Translational Medicine 2008, 6:13 doi:10.1186/1479-5876-6-13Received: 8 January 2008Accepted: 17 March 2008This article is available from: http://www.translational-medicine.com/content/6/1/13© 2008 Lind et al; licensee BioMed Central Ltd.This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0),which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.AbstractBackground: Tumor-derived aberrantly methylated DNA might serve as diagnostic biomarkers for cancer, but so far, few suchmarkers have been identified. The aim of the present study was to investigate the potential of the MAL (T-cell differentiationprotein) gene as an early epigenetic diagnostic marker for colorectal tumors.Methods: Using methylation-specific polymerase chain reaction (MSP) the promoter methylation status of MAL was analyzedin 218 samples, including normal mucosa (n = 44), colorectal adenomas (n = 63), carcinomas (n = 65), and various cancer celllines (n = 46). Direct bisulphite sequencing was performed to confirm the MSP results. MAL gene expression was investigatedwith real time quantitative analyses before and after epigenetic drug treatment. Immunohistochemical analysis of MAL was doneusing normal colon mucosa samples (n = 5) and a tissue microarray with 292 colorectal tumors.Results: Bisulphite sequencing revealed that the methylation was unequally distributed within the MAL promoter and by MSPanalysis a region close to the transcription start point was shown to be hypermethylated in the majority of colorectal carcinomas(49/61, 80%) as well as in adenomas (45/63, 71%). In contrast, only a minority of the normal mucosa samples displayedhypermethylation (1/23, 4%). The hypermethylation of MAL was significantly associated with reduced or lost gene expression inin vitro models. Furthermore, removal of the methylation re-induced gene expression in colon cancer cell lines. Finally, MALprotein was expressed in epithelial cells of normal colon mucosa, but not in the malignant cells of the same type.Conclusion: Promoter hypermethylation of MAL was present in the vast majority of benign and malignant colorectal tumors,and only rarely in normal mucosa, which makes it suitable as a diagnostic marker for early colorectal tumorigenesis.Page 1 of 11(page number not for citation purposes)
- Page 42 and 43: Results in BriefUnivariate survival
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- Page 52 and 53: DiscussionFigure 13. Mutation detec
- Page 54 and 55: DiscussionClinical impact of molecu
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- Page 60 and 61: DiscussionThese examples underline
- Page 62 and 63: Discussiongenes. One is based on mu
- Page 64 and 65: CONCLUSIONSWe have identified novel
- Page 66 and 67: Future PerspectivesMolecular risk a
- Page 68 and 69: REFERENCES1. Breasted J (1930) The
- Page 70 and 71: References29. Deng G, Chen A, Pong
- Page 72 and 73: References57. Al-Sukhni W, Aronson
- Page 74 and 75: References84. Kunkel TA (1993) Nucl
- Page 76 and 77: ReferencesLeggett B, Levine J, Kim
- Page 78 and 79: References133. Lind GE, Thorstensen
- Page 80 and 81: References156. Meling GI, Lothe RA,
- Page 82 and 83: ReferencesT, Song X, Day RH, Sledzi
- Page 84 and 85: References196. Honda S, Haruta M, S
- Page 86 and 87: ORIGINAL ARTICLESAPPENDIXAppendix I
- Page 89 and 90: GASTROENTEROLOGY 2007;132:1631-1639
- Page 91: Paper IbGuro E Lind, Terje Ahlquist
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- Page 115 and 116: 36. Khan S, Kumagai T, Vora J, Bose
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- Page 126 and 127: Table W1. Primer Sequences and dHPL
- Page 129: Paper IVTerje Ahlquist, Ellen C Rø
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Journal of Translational Medic<strong>in</strong>eBioMed CentralResearchOpen AccessHypermethylated MAL gene – a silent marker of early colontumorigenesisGuro E L<strong>in</strong>d 1,2 , Terje Ahlquist 1,2 , Matthias Kolberg 1,2 , Marianne Berg 1,2 ,Mette Eknæs 1,2 , Miguel A Alonso 3 , Anne Kallioniemi 4 , Gunn I Mel<strong>in</strong>g 5,6 ,Rolf I Skotheim 1,2 , Torleiv O Rognum 7 , Espen Thiis-Evensen 8 <strong>and</strong>Ragnhild A Lothe* 1,2Address: 1 Department of Cancer Prevention, Institute for Cancer Research, The Norwegian Radium Hospital, Rikshospitalet University Hospital,Oslo, Norway, 2 Centre for Cancer Biomedic<strong>in</strong>e, University of Oslo, Oslo, Norway, 3 Centro de Biología Molecular Severo Ochoa, Consejo Superiorde Investigaciones Científicas y Universidad Autó<strong>no</strong>ma de Madrid, Madrid, Spa<strong>in</strong>, 4 Laboratory of Cancer Genetics, Institute of MedicalTech<strong>no</strong>logy, Tampere University Hospital <strong>and</strong> University of Tampere, Tampere, F<strong>in</strong>l<strong>and</strong>, 5 Department of Urology, Akershus University Hospital,Lørenskog, Norway, 6 Faculty of Medic<strong>in</strong>e, University of Oslo, Oslo, Norway, 7 Institute of Forensic Medic<strong>in</strong>e, Rikshospitalet University Hospital,Oslo, Norway <strong>and</strong> 8 Medical Department, Rikshospitalet University Hospital, Oslo, NorwayEmail: Guro E L<strong>in</strong>d - Guro.Elisabeth.L<strong>in</strong>d@rr-<strong>research</strong>.<strong>no</strong>; Terje Ahlquist - terje.c.ahlquist@rr-<strong>research</strong>.<strong>no</strong>;Matthias Kolberg - matthias.kolberg@rr-<strong>research</strong>.<strong>no</strong>; Marianne Berg - marianne.berg@rr-<strong>research</strong>.<strong>no</strong>; Mette Eknæs - metteek@rr-<strong>research</strong>.<strong>no</strong>;Miguel A Alonso - maalonso@cbm.uam.es; Anne Kallioniemi - anne.kallioniemi@uta.fi; Gunn I Mel<strong>in</strong>g - gi@mel<strong>in</strong>g.net;Rolf I Skotheim - rolf.i.skotheim@rr-<strong>research</strong>.<strong>no</strong>; Torleiv O Rognum - t.o.rognum@medis<strong>in</strong>.uio.<strong>no</strong>; Espen Thiis-Evensen - Espen.Thiis-Evensen@rikshospitalet.<strong>no</strong>; Ragnhild A Lothe* - rlothe@rr-<strong>research</strong>.<strong>no</strong>* Correspond<strong>in</strong>g authorPublished: 17 March 2008Journal of Translational Medic<strong>in</strong>e 2008, 6:13 doi:10.1186/1479-5876-6-13Received: 8 January 2008Accepted: 17 March 2008This article is available from: http://www.translational-medic<strong>in</strong>e.com/content/6/1/13© 2008 L<strong>in</strong>d et al; licensee BioMed Central Ltd.This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0),which permits unrestricted use, distribution, <strong>and</strong> reproduction <strong>in</strong> any medium, provided the orig<strong>in</strong>al work is properly cited.AbstractBackground: Tumor-derived aberrantly methylated DNA might serve as diag<strong>no</strong>stic biomarkers for cancer, but so far, few suchmarkers have been identified. The aim of the present study was to <strong>in</strong>vestigate the potential of the MAL (T-cell differentiationprote<strong>in</strong>) gene as an early epi<strong>genetic</strong> diag<strong>no</strong>stic marker for colorectal tumors.Methods: Us<strong>in</strong>g methylation-specific polymerase cha<strong>in</strong> reaction (MSP) the promoter methylation status of MAL was analyzed<strong>in</strong> 218 samples, <strong>in</strong>clud<strong>in</strong>g <strong>no</strong>rmal mucosa (n = 44), colorectal ade<strong>no</strong>mas (n = 63), carc<strong>in</strong>omas (n = 65), <strong>and</strong> various cancer celll<strong>in</strong>es (n = 46). Direct bisulphite sequenc<strong>in</strong>g was performed to confirm the MSP results. MAL gene expression was <strong>in</strong>vestigatedwith real time quantitative analyses before <strong>and</strong> after epi<strong>genetic</strong> drug treatment. Immu<strong>no</strong>histochemical analysis of MAL was doneus<strong>in</strong>g <strong>no</strong>rmal colon mucosa samples (n = 5) <strong>and</strong> a tissue microarray with 292 colorectal tumors.Results: Bisulphite sequenc<strong>in</strong>g revealed that the methylation was unequally distributed with<strong>in</strong> the MAL promoter <strong>and</strong> by MSPanalysis a region close to the transcription start po<strong>in</strong>t was shown to be hypermethylated <strong>in</strong> the majority of colorectal carc<strong>in</strong>omas(49/61, 80%) as well as <strong>in</strong> ade<strong>no</strong>mas (45/63, 71%). In contrast, only a m<strong>in</strong>ority of the <strong>no</strong>rmal mucosa samples displayedhypermethylation (1/23, 4%). The hypermethylation of MAL was significantly associated with reduced or lost gene expression <strong>in</strong><strong>in</strong> vitro models. Furthermore, removal of the methylation re-<strong>in</strong>duced gene expression <strong>in</strong> colon cancer cell l<strong>in</strong>es. F<strong>in</strong>ally, MALprote<strong>in</strong> was expressed <strong>in</strong> epithelial cells of <strong>no</strong>rmal colon mucosa, but <strong>no</strong>t <strong>in</strong> the malignant cells of the same type.Conclusion: Promoter hypermethylation of MAL was present <strong>in</strong> the vast majority of benign <strong>and</strong> malignant colorectal tumors,<strong>and</strong> only rarely <strong>in</strong> <strong>no</strong>rmal mucosa, which makes it suitable as a diag<strong>no</strong>stic marker for early colorectal tumorigenesis.Page 1 of 11(page number <strong>no</strong>t for citation purposes)