Novel genetic and epigenetic alterations in ... - Ous-research.no
Novel genetic and epigenetic alterations in ... - Ous-research.no Novel genetic and epigenetic alterations in ... - Ous-research.no
ReferencesLeggett B, Levine J, Kim M, French AJ, Thibodeau SN, Jass J, Haile R, Laird PW(2006) CpG island methylator phenotype underlies sporadic microsatelliteinstability and is tightly associated with BRAF mutation in colorectal cancer.Nat Genet 38(7): 787-793109. Lee S, Cho NY, Yoo EJ, Kim JH, Kang GH (2008) CpG island methylatorphenotype in colorectal cancers: comparison of the new and classic CpGisland methylator phenotype marker panels. Arch Pathol Lab Med 132(10):1657-1665110. Boland CR, Thibodeau SN, Hamilton SR, Sidransky D, Eshleman JR, Burt RW,Meltzer SJ, Rodriguez-Bigas MA, Fodde R, Ranzani GN, Srivastava S (1998) ANational Cancer Institute Workshop on Microsatellite Instability for cancerdetection and familial predisposition: development of international criteria forthe determination of microsatellite instability in colorectal cancer. Cancer Res58(22): 5248-5257111. Ehrlich M (2003) The ICF syndrome, a DNA methyltransferase 3B deficiencyand immunodeficiency disease. Clin Immunol 109(1): 17-28112. Dhillon AS, Hagan S, Rath O, Kolch W (2007) MAP kinase signalling pathwaysin cancer. Oncogene 26(22): 3279-3290113. Oving IM, Clevers HC (2002) Molecular causes of colon cancer. Eur J Clin Invest32(6): 448-457114. Thorstensen L, Lothe RA (2003) The WNT Signaling Pathway and Its Role inHuman Solid Tumors. Atlas Genet Cytogenet Oncol Haematol.http://atlasgeneticsoncology.org/deep/WNTSignPathID20042.html115. Logan CY, Nusse R (2004) The Wnt signaling pathway in development anddisease. Annu Rev Cell Dev Biol 20:781-810. 781-810116. Fang JY, Richardson BC (2005) The MAPK signalling pathways and colorectalcancer. Lancet Oncol 6(5): 322-327117. Engelman JA, Luo J, Cantley LC (2006) The evolution of phosphatidylinositol 3-kinases as regulators of growth and metabolism. Nat Rev Genet 7(8): 606-619118. Shaw RJ, Cantley LC (2006) Ras, PI(3)K and mTOR signalling controls tumourcell growth. Nature 441(7092): 424-430119. Massague J (2008) TGFbeta in Cancer. Cell 134(2): 215-230120. Xu Y, Pasche B (2007) TGF-beta signaling alterations and susceptibility tocolorectal cancer. Hum Mol Genet 16 Spec No 1 R14-R20121. Derynck R, Akhurst RJ (2007) Differentiation plasticity regulated by TGF-betafamily proteins in development and disease. Nat Cell Biol 9(9): 1000-100476
References122. Thiis-Evensen E, Hoff GS, Sauar J, Langmark F, Majak BM, Vatn MH (1999)Population-based surveillance by colonoscopy: effect on the incidence ofcolorectal cancer. Telemark Polyp Study I. Scand J Gastroenterol 34(4): 414-420123. Bretthauer M, Hoff G (2007) [Prevention and early diagnosis of colorectalcancer]. Tidsskr Nor Laegeforen 127(20): 2688-2691124. Hewitson P, Glasziou P, Irwig L, Towler B, Watson E (2007) Screening forcolorectal cancer using the faecal occult blood test, Hemoccult. CochraneDatabase Syst Rev(1): CD001216125. Burch JA, Soares-Weiser K, St John DJ, Duffy S, Smith S, Kleijnen J, Westwood M(2007) Diagnostic accuracy of faecal occult blood tests used in screening forcolorectal cancer: a systematic review. J Med Screen 14(3): 132-137126. Carethers JM, Smith EJ, Behling CA, Nguyen L, Tajima A, Doctolero RT, CabreraBL, Goel A, Arnold CA, Miyai K, Boland CR (2004) Use of 5-fluorouracil andsurvival in patients with microsatellite-unstable colorectal cancer.Gastroenterology 126(2): 394-401127. Ribic CM, Sargent DJ, Moore MJ, Thibodeau SN, French AJ, Goldberg RM,Hamilton SR, Laurent-Puig P, Gryfe R, Shepherd LE, Tu D, Redston M, Gallinger S(2003) Tumor microsatellite-instability status as a predictor of benefit fromfluorouracil-based adjuvant chemotherapy for colon cancer. N Engl J Med349(3): 247-257128. Benatti P, Gafa R, Barana D, Marino M, Scarselli A, Pedroni M, Maestri I, GuerzoniL, Roncucci L, Menigatti M, Roncari B, Maffei S, Rossi G, Ponti G, Santini A, LosiL, Di GC, Oliani C, Ponz de LM, Lanza G (2005) Microsatellite instability andcolorectal cancer prognosis. Clin Cancer Res 11(23): 8332-8340129. Dahl O (2007) [Adjuvant chemotherapy for colon cancer]. Tidsskr NorLaegeforen 127(23): 3094-3096130. Duffy MJ, van DA, Haglund C, Hansson L, Holinski-Feder E, Klapdor R, Lamerz R,Peltomaki P, Sturgeon C, Topolcan O (2007) Tumour markers in colorectalcancer: European Group on Tumour Markers (EGTM) guidelines for clinicaluse. Eur J Cancer 43(9): 1348-1360131. Lind GE, Kleivi K, Meling GI, Teixeira MR, Thiis-Evensen E, Rognum TO, LotheRA (2006) ADAMTS1, CRABP1, and NR3C1 identified as epigeneticallyderegulated genes in colorectal tumorigenesis. Cell Oncol 28(5-6): 259-272132. Mori Y, Cai K, Cheng Y, Wang S, Paun B, Hamilton JP, Jin Z, Sato F, Berki AT,Kan T, Ito T, Mantzur C, Abraham JM, Meltzer SJ (2006) A genome-wide searchidentifies epigenetic silencing of somatostatin, tachykinin-1, and 5 othergenes in colon cancer. Gastroenterology 131(3): 797-80877
- Page 26 and 27: Introductioninasmuch as 80% of colo
- Page 28 and 29: IntroductionInstabilities involved
- Page 30 and 31: Introductionthere seems to be a fid
- Page 32 and 33: Introductionsevere alterations are
- Page 34 and 35: Introductionpopulation-wide screeni
- Page 36 and 37: IntroductionFigure 12. Present and
- Page 38 and 39: RESULTS IN BRIEFPaper Ia. “DNA hy
- Page 40 and 41: Results in Briefinstability, and se
- Page 42 and 43: Results in BriefUnivariate survival
- Page 44 and 45: Discussionseveral factors, and full
- Page 46 and 47: Discussionlow threshold, we increas
- Page 48 and 49: DiscussionIt may seem like unnecess
- Page 50 and 51: Discussionthan 96% DHPLC do not sta
- Page 52 and 53: DiscussionFigure 13. Mutation detec
- Page 54 and 55: DiscussionClinical impact of molecu
- Page 56 and 57: Discussionmarkers with a very high
- Page 58 and 59: Discussionchromosomes in metaphase[
- Page 60 and 61: DiscussionThese examples underline
- Page 62 and 63: Discussiongenes. One is based on mu
- Page 64 and 65: CONCLUSIONSWe have identified novel
- Page 66 and 67: Future PerspectivesMolecular risk a
- Page 68 and 69: REFERENCES1. Breasted J (1930) The
- Page 70 and 71: References29. Deng G, Chen A, Pong
- Page 72 and 73: References57. Al-Sukhni W, Aronson
- Page 74 and 75: References84. Kunkel TA (1993) Nucl
- Page 78 and 79: References133. Lind GE, Thorstensen
- Page 80 and 81: References156. Meling GI, Lothe RA,
- Page 82 and 83: ReferencesT, Song X, Day RH, Sledzi
- Page 84 and 85: References196. Honda S, Haruta M, S
- Page 86 and 87: ORIGINAL ARTICLESAPPENDIXAppendix I
- Page 89 and 90: GASTROENTEROLOGY 2007;132:1631-1639
- Page 91: Paper IbGuro E Lind, Terje Ahlquist
- Page 94 and 95: Journal of Translational Medicine 2
- Page 96 and 97: Journal of Translational Medicine 2
- Page 98 and 99: Journal of Translational Medicine 2
- Page 100 and 101: Journal of Translational Medicine 2
- Page 102 and 103: Journal of Translational Medicine 2
- Page 105: Paper IITerje Ahlquist, Guro E Lind
- Page 108 and 109: BackgroundMost cases of colorectal
- Page 110 and 111: ADAMTS1 CDKN2A CRABP1 HOXA9 MAL MGM
- Page 112 and 113: pseudogene, leading to a high rate
- Page 114 and 115: strands. Proc Natl Acad Sci U S A 1
- Page 116 and 117: concomitant absence of transcript a
- Page 119 and 120: Volume 10 Number 7 July 2008 pp. 68
- Page 121 and 122: 682 RAS Signaling in Colorectal Car
- Page 123 and 124: 684 RAS Signaling in Colorectal Car
- Page 125 and 126: 686 RAS Signaling in Colorectal Car
ReferencesLeggett B, Lev<strong>in</strong>e J, Kim M, French AJ, Thibodeau SN, Jass J, Haile R, Laird PW(2006) CpG isl<strong>and</strong> methylator phe<strong>no</strong>type underlies sporadic microsatellite<strong>in</strong>stability <strong>and</strong> is tightly associated with BRAF mutation <strong>in</strong> colorectal cancer.Nat Genet 38(7): 787-793109. Lee S, Cho NY, Yoo EJ, Kim JH, Kang GH (2008) CpG isl<strong>and</strong> methylatorphe<strong>no</strong>type <strong>in</strong> colorectal cancers: comparison of the new <strong>and</strong> classic CpGisl<strong>and</strong> methylator phe<strong>no</strong>type marker panels. Arch Pathol Lab Med 132(10):1657-1665110. Bol<strong>and</strong> CR, Thibodeau SN, Hamilton SR, Sidransky D, Eshleman JR, Burt RW,Meltzer SJ, Rodriguez-Bigas MA, Fodde R, Ranzani GN, Srivastava S (1998) ANational Cancer Institute Workshop on Microsatellite Instability for cancerdetection <strong>and</strong> familial predisposition: development of <strong>in</strong>ternational criteria forthe determ<strong>in</strong>ation of microsatellite <strong>in</strong>stability <strong>in</strong> colorectal cancer. Cancer Res58(22): 5248-5257111. Ehrlich M (2003) The ICF syndrome, a DNA methyltransferase 3B deficiency<strong>and</strong> immu<strong>no</strong>deficiency disease. Cl<strong>in</strong> Immu<strong>no</strong>l 109(1): 17-28112. Dhillon AS, Hagan S, Rath O, Kolch W (2007) MAP k<strong>in</strong>ase signall<strong>in</strong>g pathways<strong>in</strong> cancer. Oncogene 26(22): 3279-3290113. Ov<strong>in</strong>g IM, Clevers HC (2002) Molecular causes of colon cancer. Eur J Cl<strong>in</strong> Invest32(6): 448-457114. Thorstensen L, Lothe RA (2003) The WNT Signal<strong>in</strong>g Pathway <strong>and</strong> Its Role <strong>in</strong>Human Solid Tumors. Atlas Genet Cytogenet Oncol Haematol.http://atlas<strong>genetic</strong>soncology.org/deep/WNTSignPathID20042.html115. Logan CY, Nusse R (2004) The Wnt signal<strong>in</strong>g pathway <strong>in</strong> development <strong>and</strong>disease. Annu Rev Cell Dev Biol 20:781-810. 781-810116. Fang JY, Richardson BC (2005) The MAPK signall<strong>in</strong>g pathways <strong>and</strong> colorectalcancer. Lancet Oncol 6(5): 322-327117. Engelman JA, Luo J, Cantley LC (2006) The evolution of phosphatidyl<strong>in</strong>ositol 3-k<strong>in</strong>ases as regulators of growth <strong>and</strong> metabolism. Nat Rev Genet 7(8): 606-619118. Shaw RJ, Cantley LC (2006) Ras, PI(3)K <strong>and</strong> mTOR signall<strong>in</strong>g controls tumourcell growth. Nature 441(7092): 424-430119. Massague J (2008) TGFbeta <strong>in</strong> Cancer. Cell 134(2): 215-230120. Xu Y, Pasche B (2007) TGF-beta signal<strong>in</strong>g <strong>alterations</strong> <strong>and</strong> susceptibility tocolorectal cancer. Hum Mol Genet 16 Spec No 1 R14-R20121. Derynck R, Akhurst RJ (2007) Differentiation plasticity regulated by TGF-betafamily prote<strong>in</strong>s <strong>in</strong> development <strong>and</strong> disease. Nat Cell Biol 9(9): 1000-100476