PResident's RePORt 2009/2010 - University College Cork
PResident's RePORt 2009/2010 - University College Cork PResident's RePORt 2009/2010 - University College Cork
Foreword UCC at a Glance Academic Developments Teaching and Learning Research College Reports: Arts, Celtic Studies and Social Sciences Business and Law Medicine and Health Science, Engineering and Food Science Events Student Experience Sports and Recreation Buildings and Estates Cork University Press Finance Governing Body IRIS Appendix 178 Institutional Research Information System CLICK HERE to return to the President’s Report · O’Sullivan, F; Wolsztynski, E; O’Sullivan, J; Richards, T; Conrad, E; Eary, JF (2010) ‘A Statistical Modelling Approach to the Analysis of Spatial Patterns of PET-FDG Uptake in Human Sarcoma, (Submitted to)’. IEEE Transactions on Medical Imaging. · Seda, AK; Hitzler, P (2010) ‘Generalized Distance Functions in the Theory of Computation’. The Computer Journal, 53 (4):443-464. · Seda, AK; Komedantskaya, E (2009) ‘Sound and Complete SLD-Resolution for Bilattice-Based Annotated Logic Programs’. Electronic Notes in Theoretical Computer Science, 225:141-159. · Seda, AK; Lane, M (2009) ‘Properties of General Semantic Operators Determined by Logic-Based Systems’. Electronic Notes in Theoretical Computer Science, 225:181-194. · Stynes, Martin (2010) ‘Regularity and derivative bounds for a convection-diffusion problem with Neumann boundary conditions on characteristic boundaries. Z. Anal. Anwend’. Z. Anal. Anwend, 29 (2). · Viscor, M; Stynes, M (2010) ‘A robust finite difference method for a singularly perturbed degenerate parabolic problem, Part I’. International journal of numerical analysis and modelling, 7 (3):549-566. · Vladimirov, A.; Bandelow, U; Fiol, G; Arsenijevic, D; Kleinert, M; Bimberg, D; Pimenov, A; Rachinskii, D. (2010) ‘Bifurcations in a model of monolithic passively mode-locked semiconductor laser’. Journal of the Optical Society of America B, 27 (10):2102-2109. · Vladimirov, AG; Wolfrum, M; Fiol, G; Arsenijevic, D; Bimberg, D; Viktorov, E; Mandel, P; Rachinskii, D (2010) ‘Locking characteristics of a 40GHz hybrid mode-locked monolithic quantum dot laser’. Proc. SPIE Int. Soc. Opt. Eng, 7720. Conference Publications · Cronin, F; Wolsztynski, E; Eary, JF; O’Sullivan, F (2010) A novel statistical method for non-invasive (PET-based) therapeutic assessment Conference of Applied Statistics in Ireland (CASI) Portrush, Northern Ireland, UK, 2010-05-16- 2010-05-18. · O’Sullivan, F; Wolsztynski, E; Eary, JF (2010) A semi-automated segmentation procedure for PET imaging data of sarcoma tumours Conference of Applied Statistics in Ireland (CASI) Portrush, Northern Ireland, UK, 2010-05-16- 2010-05-18. · Seda, AK; Komedantskaya, E (2009) Neural Networks and Minimal Fixed Point Semantics for Logic Programs. In: L. Li and K.K. Yen eds. The Fifth International Conference on Information, Kyoto, Japan, November 6-9, 2009. · Wolsztynski, E; O’Sullivan, F; Eary, JF (2010) A novel statistical method for non-invasive (PET-based) therapeutic assessment Conference of Applied Statistics in Ireland (CASI) Portrush, Northern Ireland, UK, 2010-05-16- 2010-05-18. Published Reports · Kilian, M; Schmidt, MU; Schmitt, N (2010) Flows of equivariant constant mean curvature tori in the 3-sphere. European Mathematical Society. 178
Foreword UCC at a Glance Academic Developments Teaching and Learning Research College Reports: Arts, Celtic Studies and Social Sciences Business and Law Medicine and Health Science, Engineering and Food Science Events Student Experience Sports and Recreation Buildings and Estates Cork University Press Finance Governing Body IRIS Appendix 179 Institutional Research Information System CLICK HERE to return to the President’s Report Research Centres and Institutes Alimentary Pharmabiotic Centre Book Chapters · Julio-Piper, M; Dinan, TG (2010) ‘The Hypothalamic-pituitary-adrenal axis in depression’ In: Cryan JF, Leonard BE (Eds.). Depression: From Psychopathology to Pharmacotherapy. Basel: Karger. · Prentice, MB (2010) ‘Other Yersinia infections: yersiniosis’ In: David A. Warrell, Timothy M. Cox, John D. Firth (Eds.). The Oxford Textbook of Medicine 5th Edition. Oxford: Oxford University Press. · Prentice, MB (2010) ‘Plague: Yersinia pestis’ In: David A. Warrell, Timothy M. Cox, John D. Firth (Eds.). The Oxford Textbook of Medicine 5th Edition. Oxford: Oxford University Press. · Quigley, EMM; Rampton, D; Irving, P; Shanahan, F (2010) ‘50 Clinical Dilemmas in IBD’ In: 50 Clinical Dilemmas in IBD. Blackwell Publishing: Blackwell Publishing. Peer Reviewed Journals · Alemka, A; Clyne, M; Shanahan, F; Tompkins, T; Corcionivoschi, N; Bourke, B (2010) ‘Probiotic Colonization of the Adherent Mucus Layer of HT29MTXE12 Cells Attenuates Campylobacter jejuni Virulence Properties’. Infection and immunity, 78:2812-2822. · Bahey-EL-Din, M; Caset, PG; Griffin, BT; Gahan, C (2010) ‘Efficacy of a Lactococcus lactis DeltapyrG vaccine delivery platform expressing chromosomally integrated hly from Listeria monocytogenes’. Bioengineered Bugs, 1 (1):66-74. · Bahey-El-Din, M; Gahan, CG; Griffin, BT (2010) ‘Lactococcus lactis as a cell factory for delivery of therapeutic proteins’. Current Gene Therapy, 10 (1):34-45. · Becker, RC; Scheiman, J; Dauerman, HL; Spencer, F.,Rao, S; Sabatine, M; Johnson, DA; Chan, F; Abraham, NS; Quigley, EM (2009) ‘Management of platelet-directed pharmacotherapy in patients with atherosclerotic coronary artery disease undergoing elective endoscopic gastrointestinal procedures. Am J Gastroenterol’. The American Journal of Gastroenterology, 104 (12):2903-17. · Carroll, J; Draper, LA; O’Connor, PM; Coffey, A; Hill, C; Ross, RP; Cotter, PD; O’Mahony, J (2010) ‘Comparison of the activities of the lantibiotics nisin and lacticin 3147 against clinically significant mycobacteria’. Antimicrobial Agents And Chemotherapy, 36:132-136. · Carroll, James; Draper, Lorraine A; O’Connor, Paula M; Coffey, Aidan; Hill, Colin; Ross, Paul R; Cotter, Paul D; O’Mahony, Jim (2010) ‘Comparison of the activities of the lantibiotics nisin and lacticin 3147 against clinically significant mycobacteria’. International journal of antimicrobial agents, 36 (2):132-136. · Clarke, DJ (2010) ‘The Rcs phosphorelay: more than just a two-compoent pathway’. Future Microbiology, 5:1173-1184. · Clarke, G; Fitzgerald, P; Hennessy, AA; Cassidy, EM; Quigley, EMM; Ross, P; Stanton, C; Cryan, JF; Dinan, TG (2010) ‘Marked elevations in pro-inflammatory polyunsaturated fatty acid metabolites in females with irritable bowel syndrome’. Journal of lipid research, 51:1186-1192. · Clarke, G; O’Mahony, SM; Hennessy, AA; Ross, P; Stanton, C; Cryan, JF; Dinan, TG (2009) ‘Chain reactions: early-life stress alters the metabolic profile of plasma polyunsaturated fatty acids in adulthood’. Behavioural brain research, 205 (1):319-321. · Clarke, G; Quigley, EM; Cryan, JF; Dinan, TG (2009) ‘Irritable bowel syndrome: towards biomarker identification’. Trends in molecular medicine, 15 (10):478-489. · Codling, C; O’Mahony, L; Shanahan, F; Quigley, EM; Marchesi, JR (2010) ‘A molecular analysis of fecal and mucosal bacterial communities in irritable bowel syndrome. Dig Dis Sci’. Digestive Diseases and Sciences, 55 (2):392-7. 179
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Foreword<br />
UCC at a Glance<br />
Academic Developments<br />
Teaching and Learning<br />
Research<br />
<strong>College</strong> Reports:<br />
Arts, Celtic<br />
Studies and Social<br />
Sciences<br />
Business and Law<br />
Medicine and Health<br />
Science, Engineering and<br />
Food Science<br />
Events<br />
Student Experience<br />
Sports and Recreation<br />
Buildings and Estates<br />
<strong>Cork</strong> <strong>University</strong> Press<br />
Finance<br />
Governing Body<br />
IRIS Appendix<br />
178<br />
Institutional Research<br />
Information System<br />
CLICK HERE<br />
to return to the<br />
President’s Report<br />
· O’Sullivan, F; Wolsztynski, E; O’Sullivan, J; Richards, T; Conrad, E; Eary, JF (<strong>2010</strong>) ‘A Statistical Modelling Approach to the<br />
Analysis of Spatial Patterns of PET-FDG Uptake in Human Sarcoma, (Submitted to)’. IEEE Transactions on Medical Imaging.<br />
· Seda, AK; Hitzler, P (<strong>2010</strong>) ‘Generalized Distance Functions in the Theory of Computation’. The Computer Journal, 53<br />
(4):443-464.<br />
· Seda, AK; Komedantskaya, E (<strong>2009</strong>) ‘Sound and Complete SLD-Resolution for Bilattice-Based Annotated Logic Programs’.<br />
Electronic Notes in Theoretical Computer Science, 225:141-159.<br />
· Seda, AK; Lane, M (<strong>2009</strong>) ‘Properties of General Semantic Operators Determined by Logic-Based Systems’. Electronic<br />
Notes in Theoretical Computer Science, 225:181-194.<br />
· Stynes, Martin (<strong>2010</strong>) ‘Regularity and derivative bounds for a convection-diffusion problem with Neumann boundary<br />
conditions on characteristic boundaries. Z. Anal. Anwend’. Z. Anal. Anwend, 29 (2).<br />
· Viscor, M; Stynes, M (<strong>2010</strong>) ‘A robust finite difference method for a singularly perturbed degenerate parabolic problem, Part<br />
I’. International journal of numerical analysis and modelling, 7 (3):549-566.<br />
· Vladimirov, A.; Bandelow, U; Fiol, G; Arsenijevic, D; Kleinert, M; Bimberg, D; Pimenov, A; Rachinskii, D. (<strong>2010</strong>) ‘Bifurcations<br />
in a model of monolithic passively mode-locked semiconductor laser’. Journal of the Optical Society of America B, 27<br />
(10):2102-2109.<br />
· Vladimirov, AG; Wolfrum, M; Fiol, G; Arsenijevic, D; Bimberg, D; Viktorov, E; Mandel, P; Rachinskii, D (<strong>2010</strong>) ‘Locking<br />
characteristics of a 40GHz hybrid mode-locked monolithic quantum dot laser’. Proc. SPIE Int. Soc. Opt. Eng, 7720.<br />
Conference Publications<br />
· Cronin, F; Wolsztynski, E; Eary, JF; O’Sullivan, F (<strong>2010</strong>) A novel statistical method for non-invasive (PET-based) therapeutic<br />
assessment Conference of Applied Statistics in Ireland (CASI) Portrush, Northern Ireland, UK, <strong>2010</strong>-05-16- <strong>2010</strong>-05-18.<br />
· O’Sullivan, F; Wolsztynski, E; Eary, JF (<strong>2010</strong>) A semi-automated segmentation procedure for PET imaging data of sarcoma<br />
tumours Conference of Applied Statistics in Ireland (CASI) Portrush, Northern Ireland, UK, <strong>2010</strong>-05-16- <strong>2010</strong>-05-18.<br />
· Seda, AK; Komedantskaya, E (<strong>2009</strong>) Neural Networks and Minimal Fixed Point Semantics for Logic Programs. In: L. Li and<br />
K.K. Yen eds. The Fifth International Conference on Information, Kyoto, Japan, November 6-9, <strong>2009</strong>.<br />
· Wolsztynski, E; O’Sullivan, F; Eary, JF (<strong>2010</strong>) A novel statistical method for non-invasive (PET-based) therapeutic<br />
assessment Conference of Applied Statistics in Ireland (CASI) Portrush, Northern Ireland, UK, <strong>2010</strong>-05-16- <strong>2010</strong>-05-18.<br />
Published Reports<br />
· Kilian, M; Schmidt, MU; Schmitt, N (<strong>2010</strong>) Flows of equivariant constant mean curvature tori in the 3-sphere. European<br />
Mathematical Society.<br />
178