MacroModel Quick Start Guide - ISP

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Chapter 5: Other Calculations6. Click Start to open the Start dialog box.7. Enter XCluster in the Name text box.8. Click Start to launch the job.9. When the analysis is finished, use the visualization tools by choosing Clustering Statistics,Distance Map, or Clustering Mosaic from the Visualize menu.Descriptions and examples of the usage of these functions can be found in the MacroModelXCluster Manual and in the original literature article.62MacroModel 9.7 Quick Start Guide
MacroModel Quick Start GuideGetting HelpSchrödinger software is distributed with documentation in PDF format. If the documentation isnot installed in $SCHRODINGER/docs on a computer that you have access to, you should installit or ask your system administrator to install it.For help installing and setting up licenses for Schrödinger software and installing documentation,see the Installation Guide. For information on running jobs, see the Job Control Guide.Maestro has automatic, context-sensitive help (Auto-Help and Balloon Help, or tooltips), andan online help system. To get help, follow the steps below.• Check the Auto-Help text box, which is located at the foot of the main window. If help isavailable for the task you are performing, it is automatically displayed there. Auto-Helpcontains a single line of information. For more detailed information, use the online help.• If you want information about a GUI element, such as a button or option, there may beBalloon Help for the item. Pause the cursor over the element. If the Balloon Help doesnot appear, check that Show Balloon Help is selected in the Maestro menu of the mainwindow. If there is Balloon Help for the element, it appears within a few seconds.• For information about a panel or the tab that is displayed in a panel, click the Help buttonin the panel, or press F1. The help topic is displayed in your browser.• For other information in the online help, open the default help topic by choosing OnlineHelp from the Help menu on the main menu bar or by pressing CTRL+H. This topic is displayedin your browser. You can navigate to topics in the navigation bar.The Help menu also provides access to the manuals (including a full text search), the FAQpages, the New Features pages, and several other topics.If you do not find the information you need in the Maestro help system, check the followingsources:• Maestro User Manual, for detailed information on using Maestro• Maestro Command Reference Manual, for information on Maestro commands• Maestro Overview, for an overview of the main features of Maestro• Maestro Tutorial, for a tutorial introduction to basic Maestro features• MacroModel User Manual, for detailed information on using MacroModel• MacroModel Reference Manual, for information on MacroModel commandsMacroModel 9.7 Quick Start Guide 63
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MacroModel Quick Start Guide - ISP

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