MacroModel Quick Start Guide - ISP

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Chapter 2: Using MaestroFigure 2.2. The Atom Labels panel showing the Composition tab.3. Pause the pointer over various atoms in the protein until you find one that is in chain B.Information on an atom is displayed in the status area at the bottom of the main windowwhen the pointer pauses over the atom, beginning with the chain name.4. Choose Chains from the Delete button menu, and click on an atom in chain B.The entire chain, including the ligand, is deleted, leaving chain A.8MacroModel 9.7 Quick Start Guide
Chapter 2: Using MaestroFigure 2.3. The Find Atoms panel.2.3 Using the Find Atoms Panel to Identify MoleculesThe imported structure contains three discrete molecules. Find and visualize the three separatemolecules with the Find Atoms panel:1. From the Edit menu, choose Find to open the Find Atoms panel (see Figure 2.3).2. Under Find types, choose Molecule.3. Enter 1 in the Molecule number text box.4. Select Mark principal atoms and Center.5. Click Find.6. Enter 2 in the Molecule number text box and click Find, to find molecule 2. Repeat formolecules 3 and 4. Molecule 4 is the ligand.7. When you have finished finding the molecules, clear all the options in the lower left of thepanel and close the Find panel.MacroModel 9.7 Quick Start Guide 9
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MacroModel Quick Start Guide - ISP

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