MacroModel Quick Start Guide - ISP

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Chapter 1: Getting Started1.3.3 Setting the Maestro Working DirectoryIf you are running Maestro under Windows, or if you are using an existing Maestro sessionunder UNIX, you must change to the working directory that you created for the tutorial inSection 1.3.1.1. Choose Change Directory from the Maestro menu.2. Navigate to the working directory and click Choose.4MacroModel 9.7 Quick Start Guide
poMacroModel Quick Start GuideChapter 2Chapter 2:Using MaestroThe exercises in this section present a quick tour of some aspects of the Maestro interface,including the following:• Importing a structure file• Deleting portions of a Workspace structure• Using the Find feature to locate particular structural elements• Displaying, undisplaying, and labeling atoms and molecules• Generating and displaying surfaces• Defining atom sets for use when selecting atomsYou can find additional information about Maestro in the Maestro User Manual, and an introductionto building, adjusting, displaying, and representing structures in the Maestro Tutorial.Most of the exercises in this chapter use the structure in 1err.pdb, which you copied to yourworking directory from the QuickTopics directory.2.1 Importing a StructureTo display an existing structure in the Workspace, you must import the structure into thecurrent project. Follow the instructions below to import the 1err protein-ligand complex intoa named project. (You can work in a scratch project, but using a named project enables you toorganize the results of your calculations.)1. Click the Save As toolbar button.2. In the File name text box, enter 1err.prj, then click Open.3. Click the Import structures button on the main toolbar.The Import panel opens (see Figure 2.1). It should display the contents of your workingdirectory.MacroModel 9.7 Quick Start Guide 5
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MacroModel Quick Start Guide - ISP

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