Package 'pathview' - Bioconductor

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28 wordwrapwordwrapWrap or break strings into lines of specified widthDescriptionstrfit does hard wrapping, i.e. break within long words, wordwrap is a wrapper of strfit but alsoprovides soft wrapping option, i.e. break only between words, and keep long words intact.Usagewordwrap(s, width = 20, break.word = FALSE)strfit(s, width = 20)Argumentsswidthbreak.wordcharaccter, strings to be wrapped or broken down.integer, target line width in terms of number of characters. d width=20.logical, whether to break within words or only between words as to fit the linewidth. Default break.word=FALSE, i.e. keep words intact and only break betweenwords. Therefore, some line may exceed the width limit.DetailsThese functions are called as to wrap long node labels into shorter lines on pathway graphs inkeggview.graph function (when keggview.native=FALSE). They are equally useful for wrappinglong labels in other types of graphs or output formats.Valuecharacter of the same length of s except that each element has been wrapped softly or hardly.Author(s)Weijun Luo ReferencesLuo, W. and Brouwer, C., Pathview: an R/<strong>Bioconductor</strong> package for pathway based data integrationand visualization. Bioinformatics, 2013, 29(14): 1830-1831, doi: 10.1093/bioinformatics/btt285See Alsostrwrap in R base.
wordwrap 29Exampleslong.str="(S)-Methylmalonate semialdehyde"wr1=wordwrap(long.str, width=15)#long word intactcat(wr1, sep="\n")wr2=strfit(long.str, width=15)#long word splitcat(wr2, sep="\n")
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Page 4 and 5: 4 cpd.accsReferencesLuo, W. and Bro
Page 6 and 7: 6 demo.dataPathview mapper module,
Page 8 and 9: 8 eg2idDetailsSpecies can be specif
Page 10 and 11: 10 kegg.species.codeExamplesdata(ge
Page 12 and 13: 12 mol.summol.sumMapping and summat
Page 14 and 15: 14 node.colorUsagenode.color(plot.d
Page 16 and 17: 16 node.infoExamplesxml.file=system
Page 18 and 19: 18 node.mapnode.sumentrez.gnodescha
Page 20 and 21: 20 pathview"gray"), high = list(gen
Page 22 and 23: 22 pathviewbinsboth.dirstrans.funLe
Page 24 and 25: 24 pathviewafactortext.widthnumeric
Page 26 and 27: 26 sim.mol.datahead(pv.out$plot.dat
Page 30: Index∗Topic \textasciitildekwd1co

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