Package 'pathview' - Bioconductor

korg 11ReferencesLuo, W. and Brouwer, C., Pathview: an R/Bioconductor package for pathway based data integrationand visualization. Bioinformatics, 2013, 29(14): 1830-1831, doi: 10.1093/bioinformatics/btt285See Alsokorg the species and KEGG code mapping data, cpd2kegg etc the auxillary compound ID mappers,download.kegg the downloader function.Examplesspecies=c("ptr", "Mus musculus", "dog", "happ")kcode=kegg.species.code(species = species, na.rm = FALSE)print(kcode)korgMapping data on KEGG species code and corresponding Bioconductorgene annotation packageDescriptionUsageFormatSourceData on KEGG species, including KEGG code, scientific name, common name, corresponding geneID types, and gene annotation package names in Bioconductordata(korg)data(bods)korg is a character matrix of ~3000 rows and 6 columns. First 3 columns are KEGG species code,scientific name and common name, followed columns on gene ID types used for each species:entrez.gnodes ("1" or "0", whether EntrezGene is the default gene ID) and representative KEGGgene ID and EntrezGene ID.bods is a character matrix of 19 rows and 3 columns on the mapping between gene annotationpackage names in Bioconductor, common name and KEGG code of most common research species.http://www.genome.jp/kegg-bin/get_htext?br08601.keghttp://bioconductor.org/packages/release/BiocViews.html#___OrgDbExamplesdata(korg)data(bods)head(korg)head(bods)