Package 'oligo' - Bioconductor

44 INDEXpmAllele,SnpFeatureSet-method(pmAllele), 29pmChr (chromosome), 7pmChr,ExonFeatureSet-method(chromosome), 7pmChr,FeatureSet-method (chromosome), 7pmChr,GeneFeatureSet-method(chromosome), 7pmFragmentLength, 30pmFragmentLength,AffySNPPDInfo-method(pmFragmentLength), 30pmFragmentLength,SnpFeatureSet-method(pmFragmentLength), 30pmindex (mmindex), 23pmindex,DBPDInfo-method (mmindex), 23pmindex,FeatureSet-method (mmindex), 23pmindex,stArrayDBPDInfo-method(mmindex), 23pmOffset (pmPosition), 30pmOffset,AffySNPPDInfo-method(pmPosition), 30pmPosition, 30pmPosition,ExpressionPDInfo-method(pmPosition), 30pmPosition,FeatureSet-method(pmPosition), 30pmPosition,TilingFeatureSet-method(pmPosition), 30pmPosition,TilingPDInfo-method(pmPosition), 30pmSequence (mmSequence), 24pmSequence,AffyGenePDInfo-method(mmSequence), 24pmSequence,AffySNPPDInfo-method(mmSequence), 24pmSequence,DBPDInfo-method(mmSequence), 24pmSequence,ExonFeatureSet-method(mmSequence), 24pmSequence,FeatureSet-method(mmSequence), 24pmSequence,GeneFeatureSet-method(mmSequence), 24pmSequence,stArrayDBPDInfo-method(mmSequence), 24pmStrand, 31pmStrand,AffySNPPDInfo-method(pmStrand), 31pmStrand,TilingFeatureSet-method(pmStrand), 31probeNames, 31probeNames,DBPDInfo-method(probeNames), 31probeNames,ExonFeatureSet-method(probeNames), 31probeNames,FeatureSet-method(probeNames), 31probeNames,GeneFeatureSet-method(probeNames), 31probeNames,stArrayDBPDInfo-method(probeNames), 31probesetNames (probeNames), 31probesetNames,FeatureSet-method(probeNames), 31rcModelPLM, 5rcModelPLMr, 5rcModelPLMrc, 5rcModelPLMrr, 5read.celfiles, 32, 34read.celfiles2 (read.celfiles), 32read.xysfiles, 33, 33read.xysfiles2 (read.xysfiles), 33readSummaries, 35resids (oligo-defunct), 24residuals,oligoPLM-method(oligoPLM-class), 25residualSE (oligoPLM-class), 25residualSE,oligoPLM-method(oligoPLM-class), 25RLE (oligoPLM-class), 25RLE,oligoPLM-method (oligoPLM-class), 25rma, 11, 26rma (rma-methods), 35rma,ExonFeatureSet-method(rma-methods), 35rma,ExpressionFeatureSet-method(rma-methods), 35rma,GeneFeatureSet-method(rma-methods), 35rma,HTAFeatureSet-method (rma-methods),35rma,SnpCnvFeatureSet-method(rma-methods), 35rma-methods, 35runDate, 37runDate,FeatureSet-method (runDate), 37