Package 'oligo' - Bioconductor

26 oligoPLM-classMethodsannotation signature(object = "oligoPLM"): accessor/replacement method to annotation slotboxplot signature(x = "oligoPLM"): boxplot methodcoef signature(object = "oligoPLM"): accessor/replacement method to coef slotcoefs.probe signature(object = "oligoPLM"): accessor/replacement method to coefs.probeslotgeometry signature(object = "oligoPLM"): accessor/replacement method to geometry slotimage signature(x = "oligoPLM"): image methodmanufacturer signature(object = "oligoPLM"): accessor/replacement method to manufacturerslotmethod signature(object = "oligoPLM"): accessor/replacement method to method slotncol signature(x = "oligoPLM"): accessor/replacement method to ncol slotnprobes signature(object = "oligoPLM"): accessor/replacement method to nprobes slotnprobesets signature(object = "oligoPLM"): accessor/replacement method to nprobesets slotresiduals signature(object = "oligoPLM"): accessor/replacement method to residuals slotresidualSE signature(object = "oligoPLM"): accessor/replacement method to residualSE slotse signature(object = "oligoPLM"): accessor/replacement method to se slotse.probe signature(object = "oligoPLM"): accessor/replacement method to se.probe slotshow signature(object = "oligoPLM"): show methodweights signature(object = "oligoPLM"): accessor/replacement method to weights slotNUSE signature(x = "oligoPLM") : Boxplot of Normalized Unscaled Standard Errors (NUSE)or NUSE values.RLE signature(x = "oligoPLM") : Relative Log Expression boxplot or values.Author(s)This is a port from Ben Bolstad’s work implemented in the affyPLM package. Problems with theimplementation in oligo should be reported to the package’s maintainer.ReferencesBolstad, BM (2004) Low Level Analysis of High-density Oligonucleotide Array Data: Background,Normalization and Summarization. PhD Dissertation. University of California, Berkeley.See Alsorma, summarize