Package 'oligo' - Bioconductor

12 getContainergetBaseProfileCompute and plot nucleotide profile.DescriptionComputes and, optionally, lots nucleotide profile, describing the sequence effect on intensities.UsagegetBaseProfile(coefs, probeLength = 25, plot = FALSE, ...)Argumentscoefsaffinity spline coefficients.probeLength length of probesplotlogical. Plots profile?... arguments to be passed to matplot.ValueInvisibly returns a matrix with estimated effects.getContainerGet container information for NimbleGen Tiling Arrays.DescriptionGet container information for NimbleGen Tiling Arrays. This is useful for better identification ofcontrol probes.UsagegetContainer(object, probeType)ArgumentsobjectprobeTypeA TilingFeatureSet or TilingFeatureSet object.String describing which probes to query (’pm’, ’bg’)Value’character’ vector with container information.