Package 'ChIPpeakAnno' - Bioconductor

42 write2FASTAArgumentsmySeqfilewidthRangedData with varibles name and sequence ,e.g., results obtained from getAll-PeakSequenceEither a character string naming a file or a connection open for reading or writing.If "" (the default for write2FASTA), then the function writes to the standardoutput connection (the console) unless redirected by sinkThe maximum number of letters per line of sequenceValueOutput as FASTA file format to the naming file or the console.Author(s)Lihua Julie ZhuExamplespeaksWithSequences = RangedData(IRanges(start=c(1000, 2000), end=c(1010, 2010),names=c("id1", "id2")), sequence= c("CCCCCCCCGGGGG", "TTTTTTTAAAAAA"))write2FASTA(peaksWithSequences, file="testseq.fasta", width=50)