Package 'ChIPpeakAnno' - Bioconductor
Package 'ChIPpeakAnno' - Bioconductor
Package 'ChIPpeakAnno' - Bioconductor
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ExonPlusUtr.human.GRCh37 17count.InGenome: count of this GO term in the genomepvalue: pvalue from the hypergeometric testtotaltermInDataset: count of all GO terms in this datasettotaltermInGenome: count of all GO terms in the genomemf enriched molecular function with the following 9 variablesgo.id:GO molecular function idgo.term:GO molecular function termgo.Definition:GO molecular function descriptionOntology: Ontology branch, i.e. MF for molecular functioncount.InDataset: count of this GO term in this datasetcount.InGenome: count of this GO term in the genomepvalue: pvalue from the hypergeometric testtotaltermInDataset: count of all GO terms in this datasettotaltermInGenome: count of all GO terms in the genomecc enriched cellular component the following 9 variablesgo.id:GO cellular component idgo.term:GO cellular component termgo.Definition:GO cellular component descriptionOntology: Ontology type, i.e. CC for cellular componentcount.InDataset: count of this GO term in this datasetcount.InGenome: count of this GO term in the genomepvalue: pvalue from the hypergeometric testtotaltermInDataset: count of all GO terms in this datasettotaltermInGenome: count of all GO terms in the genomeAuthor(s)Lihua Julie ZhuExamplesdata(enrichedGO)dim(enrichedGO$mf)dim(enrichedGO$cc)dim(enrichedGO$bp)ExonPlusUtr.human.GRCh37Gene model with exon, 5’ UTR and 3’ UTR information for humansapiens (GRCh37) obtained from biomaRtDescriptionGene model with exon, 5’ UTR and 3’ UTR information for human sapiens (GRCh37) obtainedfrom biomaRt