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Sebastian Mate // Department for Medical Informatics // University <strong>of</strong> Erlangen-Nuremberg Data Export SQL statement construction OP1.E A B C OP1.A OP1.V 2 4 OP2.E A B C OP2.A OP2.V 2 5 4 E A B A … … V 4 9 INSERT INTO TEMPTABLE(E, A, V) SELECT OP1.E, „Sum…“, OP1.V + OP2.V FROM (SELECT E, A, V FROM …) OP1 FULL OUTER JOIN (SELECT E, A, V FROM …) OP2 ON OP1.E = OP2.E WHERE OP1.V IS NOT NULL AND … Write result into temporary table 28
Sebastian Mate // Department for Medical Informatics // University <strong>of</strong> Erlangen-Nuremberg Summary and Tools CSV file „Virtual“ Source System OntoGen Target Dataset Source System Gleason3 PSA ADD Gleason1 Gleason2 PSA_value PSA: Target Ontology Mapping Ontology Source Ontology OntoEdit QuickMapp OntoExport i2b2 Alternative workflow to integrate CSV files if access to the source system is not available. 29
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