2D NMR Experiments gCOSY (gradient COrrelation SpectroscopY ...
2D NMR Experiments gCOSY (gradient COrrelation SpectroscopY ... 2D NMR Experiments gCOSY (gradient COrrelation SpectroscopY ...
2D NMR Experiments gCOSY (gradient COrrelation SpectroscopY): a two‐dimensional NMR technique where the cross‐peaks appear between protons that have 3‐ bond proton‐proton scalar coupling, 3 J HH ROESY (Rotating‐frame Overhauser Effect SpectroscopY): a twodimensional NMR technique where the cross‐peaks appear between protons that are within 6 Å of each other, the closer in space the two protons are to each other the more intense the cross‐peak NOESY (Nuclear Overhauser Effect SpectropY): a two‐dimensional NMR technique where the cross‐peaks appear between protons that are within 6 Å of each other, the closer in space the two protons are to each other the more intense the cross‐peak gHSQC (gradient Heteronuclear Single Quantum Coherence): a two gHSQC (gradient Heteronuclear Single Quantum Coherence): a twodimensional NMR technique where one axis is 1 H and the other is 13 C. This experiment does not have a diagonal and peaks appear for one‐bond H,Ccorrelation.
- Page 2 and 3: Optimizing your setup Step 1 Tune t
- Page 4 and 5: Setting up the 2D experiment 1) In
- Page 6: ROESY What to change three paramete
<strong>2D</strong> <strong>NMR</strong> <strong>Experiments</strong><br />
<strong>gCOSY</strong> (<strong>gradient</strong> <strong>COrrelation</strong> <strong>SpectroscopY</strong>): a two‐dimensional <strong>NMR</strong><br />
technique where the cross‐peaks appear between protons that have 3‐<br />
bond proton‐proton scalar coupling, 3 J HH<br />
ROESY (Rotating‐frame Overhauser Effect <strong>SpectroscopY</strong>): a twodimensional<br />
<strong>NMR</strong> technique where the cross‐peaks appear between<br />
protons that are within 6 Å of each other, the closer in space the two<br />
protons are to each other the more intense the cross‐peak<br />
NOESY (Nuclear Overhauser Effect SpectropY): a two‐dimensional <strong>NMR</strong><br />
technique where the cross‐peaks appear between protons that are within 6<br />
Å of each other, the closer in space the two protons are to each other the<br />
more intense the cross‐peak<br />
gHSQC (<strong>gradient</strong> Heteronuclear Single Quantum Coherence): a two<br />
gHSQC (<strong>gradient</strong> Heteronuclear Single Quantum Coherence): a twodimensional<br />
<strong>NMR</strong> technique where one axis is 1 H and the other is 13 C. This<br />
experiment does not have a diagonal and peaks appear for one‐bond H,Ccorrelation.
Optimizing your setup<br />
Step 1 Tune the <strong>NMR</strong> to your sample gives you the best sensitivity/resolution for <strong>2D</strong><br />
use mtune to adjust to get best dip<br />
Step 2 Lock and shim gives you best resolution/lineshape<br />
If you want to ensure that the instrument is in a good state when you begin do 3<br />
things, load in fresh parameters for your experiment and load in fresh shims then type su.<br />
Step 3 Determine the 1 H and 13 C pw 90 for your sample give best sensitivity with least<br />
amount of artifacts for <strong>2D</strong> experiments<br />
a. 1 H pw 90<br />
not that important for <strong>gCOSY</strong><br />
b. only need to do 1 H pw for ROESY and NOESY but you need to determine the<br />
1 90<br />
H pw 90<br />
and the 13 C pw 90<br />
for gHSQC<br />
How to determine pw 90<br />
for your sample<br />
array the parameter pw and look for the 360⁰ null and then divide that<br />
number by 4<br />
Procedure:<br />
load in 1D 1 H proton experiment<br />
tune and shim your sample<br />
type d1=10<br />
type pw90 to get default pw 90<br />
value<br />
array parameter pw to 4*pw 90<br />
±10 (type (yp array follow instructions)<br />
repeat array command with 0.2 µsec step size around best 4*pw 90<br />
value determined above
Determining the optimum mix time for your sample<br />
Run a 1D <strong>NMR</strong> of your sample<br />
Load the selective 1D experiment that you plan to do a <strong>2D</strong> version of later<br />
Select an area of the spectrum to excite by putting cursors around it and clicking first<br />
select then proceed<br />
Array the mix time for 0.2 to 1<br />
Find the NOE/ROE peak that has the highest intensity and use it’s mixing time in your <strong>2D</strong><br />
experiment<br />
What am I observing<br />
Lets say you select an aromatic peak in your 1D 1 H spectrum to selectively<br />
excite then you run the Noesy1d. The spectrometer will acquire a 1D 1 H spectrum and<br />
only excite the peak you selected, any other peaks that appear in the spectrum are NOE<br />
peaks whose intensity depends on the mixing time.
Setting up the <strong>2D</strong> experiment<br />
1) In setting up a <strong>2D</strong> experiment you either add a proton experiment or one will be added<br />
for you before your <strong>2D</strong> experiment.<br />
In the proton experiment either set the spectral width to the desired range or<br />
turn off minsw<br />
Type pw90=your empirically determined pw 90<br />
for your sample<br />
then type pw=pw90<br />
2) For all <strong>NMR</strong> experiments the number of scans is a function of concentration, ti less<br />
concentrated means you need to do more scans<br />
Signal‐to‐noise is proportional to (number of scans) 2<br />
‐so if you half the concentration you need to do four times the number<br />
of scans<br />
*In general it is better to increase the number of scans over the number of<br />
increments
Experiment specifics<br />
<strong>gCOSY</strong><br />
What to change<br />
two parameters<br />
1. number of scans that you do per increment improves signal‐to‐noise<br />
2. number of increments improves resolution<br />
both of these will increase experimental time<br />
generally 1 scan and 128 increments will give you acceptable spectra<br />
NOESY<br />
What to change<br />
three parameters<br />
1. number of scans that you do per increment improves signal‐to‐noise<br />
noise<br />
2. number of increments improves resolution<br />
3. mixing time this is a parameter that affects the intensity of the crosspeak you<br />
observe, too short of the time and the crosspeak intensity will not have time to develop, too<br />
long of a time and the signal will relax back to equilibrium i and you’ll lose the crosspeak<br />
‐either determine mix experimentally or use 800 milliseconds<br />
8 scans and 128 increments is acceptable
ROESY<br />
What to change<br />
three parameters<br />
1. number of scans that you do per increment improves signal‐to‐noise<br />
noise<br />
2. number of increments improves resolution<br />
3. mixing time this is a parameter that affects the intensity of the crosspeak you<br />
observe, too short of the time and the crosspeak intensity will not have time to develop, too<br />
long of a time and the signal will relax back to equilibrium and you’ll lose the crosspeak<br />
‐either determine mix experimentally or use 800 milliseconds<br />
8 scans and 128 increments is acceptable<br />
gHSQC<br />
What to change<br />
five parameters<br />
1. number of scans that you do per increment improves signal‐to‐noise<br />
2. number of increments improves resolution<br />
3. how you want to handle multiplicity (yes or no)<br />
4. spectral range of the 13 C axis<br />
5. 1 J CH<br />
one‐bond carbon‐proton coupling constant, default is 140 Hz<br />
2 scans and 128 increments is acceptable