Package 'KEGGgraph' - Bioconductor

More documents

Recommendations

Info

34 parseEntry Author(s) Jitao David Zhang References D.B. West. Introduction to Graph Theory, Second Edition. Prentice Hall, 2001 Examples V
parseGraphics 35 Details See http://www.genome.jp/kegg/docs/xml/ for more details about ’entry’ as well as other elements in KGML files. Value An object of link{KEGGNode} or (in case of a group node) link{KEGGGroup} Author(s) Jitao David Zhang References http://www.genome.jp/kegg/docs/xml/ See Also parseGraphics, parseKGML, KEGGNode-class, KEGGGroup-class parseGraphics Parse ’graphics’ elements in KGML files Description The function parses ’graphics’ elements in KGML files, and it is mainly used internally. Usage parseGraphics(graphics) Arguments graphics XML node Details The function is called by other parsing functions and not intended to be called directly by user. Value An object of KEGGGraphics-class. Author(s) Jitao David Zhang mailto:jitao_david.zhang@roche.com
Page 1 and 2: Package ‘KEGGgraph’ May 22, 201
Page 3 and 4: expandKEGGNode 3 queryKEGGsubgraph
Page 5 and 6: getEntryID-methods 5 Examples sfile
Page 7 and 8: getKEGGnodeData 7 getKEGGnodeData G
Page 9 and 10: getName-methods 9 Note So far the f
Page 11 and 12: getPathwayInfo-methods 11 Arguments
Page 13 and 14: getRgraphvizEdgeNames 13 getRgraphv
Page 15 and 16: getType-methods 15 Examples sfile
Page 17 and 18: isHomoList 17 Examples tnodes
Page 19 and 20: KEGGEdgeSubtype 19 Examples mapfile
Page 21 and 22: KEGGGraphics-class 21 KEGGGraphics-
Page 23 and 24: KEGGNode-class 23 KEGGNode-class Cl
Page 25 and 26: KEGGpathway2Graph 25 getPathwayInfo
Page 27 and 28: KEGGpathway2reactionGraph 27 Descri
Page 29 and 30: KEGGReaction-class 29 Examples sfil
Page 31 and 32: mergeGraphs 31 mergeGraphs A functi
Page 33: neighborhood 33 Examples sfile
Page 37 and 38: parseKGML2DataFrame 37 parseKGML2Da
Page 39 and 40: parseKGMLexpandMaps 39 Examples sfi
Page 41 and 42: parseReaction 41 parseReaction Pars
Page 43 and 44: plotKEGGgraph 43 plotKEGGgraph Plot
Page 45 and 46: queryKEGGsubgraph 45 queryKEGGsubgr
Page 47 and 48: splitKEGGgroup 47 splitKEGGgroup Sp
Page 49 and 50: subtypeDisplay-methods 49 Arguments
Page 51 and 52: translateKEGGID2GeneID 51 Details T
Page 53 and 54: Index ∗Topic IO getKGMLurl, 8 par
Page 55: INDEX 55 nodes,KEGGPathway-method (

Package 'KEGGgraph' - Bioconductor

Create successful ePaper yourself

Delete template?

Save as template?