Package 'KEGGgraph' - Bioconductor

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24 KEGGPathway-class See Also KEGGEdge-class, parseEntry Examples ## We show how to extract information from KEGGNode object sfile
KEGGpathway2Graph 25 getPathwayInfo signature(object = "KEGGPathway"): getting KEGGPathwayInfo getTitle signature(object = "KEGGPathway"): getting title of the pathway show signature(object = "KEGGPathway"): display method Author(s) Jitao David Zhang mailto:jitao_david.zhang@roche.com References KGML Document manual http://www.genome.jp/kegg/docs/xml/ See Also parseKGML, KEGGEdge-class, KEGGNode-class, KEGGReaction-class Examples ## We show how to extract information from KEGGPathway objects ## Parse KGML file into a KEGGPathway object mapfile
Page 1 and 2: Package ‘KEGGgraph’ May 22, 201
Page 3 and 4: expandKEGGNode 3 queryKEGGsubgraph
Page 5 and 6: getEntryID-methods 5 Examples sfile
Page 7 and 8: getKEGGnodeData 7 getKEGGnodeData G
Page 9 and 10: getName-methods 9 Note So far the f
Page 11 and 12: getPathwayInfo-methods 11 Arguments
Page 13 and 14: getRgraphvizEdgeNames 13 getRgraphv
Page 15 and 16: getType-methods 15 Examples sfile
Page 17 and 18: isHomoList 17 Examples tnodes
Page 19 and 20: KEGGEdgeSubtype 19 Examples mapfile
Page 21 and 22: KEGGGraphics-class 21 KEGGGraphics-
Page 23: KEGGNode-class 23 KEGGNode-class Cl
Page 27 and 28: KEGGpathway2reactionGraph 27 Descri
Page 29 and 30: KEGGReaction-class 29 Examples sfil
Page 31 and 32: mergeGraphs 31 mergeGraphs A functi
Page 33 and 34: neighborhood 33 Examples sfile
Page 35 and 36: parseGraphics 35 Details See http:/
Page 37 and 38: parseKGML2DataFrame 37 parseKGML2Da
Page 39 and 40: parseKGMLexpandMaps 39 Examples sfi
Page 41 and 42: parseReaction 41 parseReaction Pars
Page 43 and 44: plotKEGGgraph 43 plotKEGGgraph Plot
Page 45 and 46: queryKEGGsubgraph 45 queryKEGGsubgr
Page 47 and 48: splitKEGGgroup 47 splitKEGGgroup Sp
Page 49 and 50: subtypeDisplay-methods 49 Arguments
Page 51 and 52: translateKEGGID2GeneID 51 Details T
Page 53 and 54: Index ∗Topic IO getKGMLurl, 8 par
Page 55: INDEX 55 nodes,KEGGPathway-method (

Package 'KEGGgraph' - Bioconductor

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