Package 'limma' - Bioconductor
Package 'limma' - Bioconductor
Package 'limma' - Bioconductor
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50 diffSplice<br />
exonid<br />
verbose<br />
exon identifiers. Either a vector of length nrow(fit) or the name of the column<br />
of fit$genes containing the exon identifiers.<br />
logical, if TRUE some diagnostic information about the number of genes and<br />
exons is output.<br />
Details<br />
This function is often used in conjunction with voom.<br />
Value<br />
An object of class MArrayLM containing both exon level and gene level tests. Results are sorted by<br />
geneid and by exonid within gene.<br />
coefficients<br />
t<br />
p.value<br />
genes<br />
genecolname<br />
gene.F<br />
numeric matrix of coefficients of same dimensions as fit. Each coefficient is<br />
the difference between the log-fold-change for that exon versus the average logfold-change<br />
for all other exons for the same gene.<br />
numeric matrix of moderated t-statistics<br />
numeric vector of p-values corresponding to the t-statistics<br />
data.frame of exon annotation<br />
character string giving the name of the column of genes containing gene IDs<br />
numeric vector of moderated F-statistics, one for each gene.<br />
gene.F.p.value numeric vector of p-values corresponding to gene.F<br />
Author(s)<br />
Gordon Smyth and Charity Law<br />
See Also<br />
voom<br />
Examples<br />
## Not run:<br />
v
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