Package 'limma' - Bioconductor
Package 'limma' - Bioconductor
Package 'limma' - Bioconductor
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30 barcodeplot<br />
Value<br />
A matrix, EListRaw or RGList object in which foreground intensities have been background corrected<br />
and any components containing background intensities have been removed.<br />
Author(s)<br />
Gordon Smyth<br />
References<br />
Edwards, D. E. (2003). Non-linear normalization and background correction in one-channel cDNA<br />
microarray studies Bioinformatics 19, 825-833.<br />
McGee, M., and Chen, Z. (2006). Parameter estimation for the exponential-normal convolution<br />
model for background correction of Affymetrix GeneChip data. Stat Appl Genet Mol Biol, Volume<br />
5, Article 24.<br />
Ritchie, M. E., Silver, J., Oshlack, A., Silver, J., Holmes, M., Diyagama, D., Holloway, A., and<br />
Smyth, G. K. (2007). A comparison of background correction methods for two-colour microarrays.<br />
Bioinformatics 23, 2700-2707. http://bioinformatics.oxfordjournals.org/cgi/content/<br />
abstract/btm412<br />
Silver, J., Ritchie, M. E., and Smyth, G. K. (2009). Microarray background correction: maximum<br />
likelihood estimation for the normal-exponential convolution model. Biostatistics 10, 352-363.<br />
http://biostatistics.oxfordjournals.org/cgi/content/abstract/kxn042<br />
See Also<br />
kooperberg, neqc.<br />
An overview of background correction functions is given in 04.Background.<br />
Examples<br />
RG
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