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J. Theor. Biol. 2006 - Pàgines de la UAB

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256<br />

ARTICLE IN PRESS<br />

J.F. Fontanari et al. / Journal of <strong>Theor</strong>etical <strong>Biol</strong>ogy 239 (<strong>2006</strong>) 247–256<br />

Acknowledgments<br />

This work was done during the visit of J.F.F. to<br />

Collegium Budapest in November 2003. J.F.F. is supported<br />

by CNPq and FAPESP, project 99/09644-9. M.S. is<br />

supported by a fellowship (PR2003-0431) from the<br />

Programa Nacional <strong>de</strong> Ayudas para <strong>la</strong> Movilidad <strong>de</strong><br />

Profesores <strong>de</strong> Universidad, Ministerio <strong>de</strong> Educacio´n,<br />

Cultura y Deporte (Spain); and by Fundacio´n Ramo´n<br />

Areces (Spain). M.S. and E.S. greatly acknowledge the<br />

sponsorship from COST-European Cooperation in the<br />

field of Scientific and Technical Research, Internal Project<br />

number D27/0003/02 ‘‘Emergence and Selection of Networks<br />

of Catalytic Species’’ (URL: http://cost.cordis.lu/<br />

src/extranet/publish/D27WGP/d27-0003-02.cfm).<br />

References<br />

Alves, D., Campos, P.R.A., Silva, A.T.C., Fontanari, J.F., 2001. Group<br />

selection mo<strong>de</strong>ls in prebiotic evolution. Phys. Rev. E 63, 011911.<br />

Aoki, K., 1982. A condition for group selection to prevail over<br />

counteracting individual selection. Evolution 36, 832–842.<br />

Boerlijst, M.C., Hogeweg, P., 1991. Spiral wave structure in pre-biotic<br />

evolution: hypercycles stable against parasites. Physica D 48, 17–28.<br />

Boorman, S.A., Levitt, P.R., 1980. The Genetics of Altruism. Aca<strong>de</strong>mic<br />

Press, New York.<br />

Campos, P.R.A., Fontanari, J.F., Stadler, P.F., 2000. Error propagation<br />

in the hypercycle. Phys. Rev. E 61, 2996–3002.<br />

Crow, J.F., Kimura, M., 1965. Evolution in sexual and asexual<br />

popu<strong>la</strong>tions. Am. Nat. 99, 439–450.<br />

Czárán, T., Szathmáry, E., 2000. Coexistence of replicators in prebiotic<br />

evolution. In: Dieckmann, U., Law, R., Metz, J.A.J. (Eds.), The<br />

Geometry of Ecological Interactions: Simplifying Spatial Complexity.<br />

Cambridge University Press, Cambridge, pp. 116–135.<br />

Donato, R., Peliti, L., Serva, M., 1997. The selection of altruistic<br />

behaviour. <strong>Theor</strong>. Biosci. 116, 309–320.<br />

Doudna, J.A., Lorsch, J.R., 2005. Ribozyme catalysis: not different, just<br />

worse. Nat. Struct. <strong>Biol</strong>. 12, 395–402.<br />

Doudna, J.A., Szostak, J.W., 1989. RNA-catalyzed synthesis of complementary-strand<br />

RNA. Nature 339, 519–522.<br />

Dyson, F.J., 1985. Origins of Life. Cambridge University Press, Cambridge.<br />

Eigen, M., 1971. Self-organization of matter and the evolution of<br />

macromolecules. Naturwissenschaften 58, 465–523.<br />

Eigen, M., Schuster, P., 1979. The Hypercycle: a Principle of Natural Self-<br />

Organization. Springer, Berlin.<br />

Eshel, I., 1972. On the neighbor effect and the evolution of altruistic traits.<br />

<strong>Theor</strong>. Popul. <strong>Biol</strong>. 3, 258–277.<br />

Gánti, T., 1987. The Principle of Life. OMIKK, Budapest.<br />

Gánti, T., 2003. The Principles of Life. Oxford University Press, Oxford.<br />

García-Tejedor, A., Mora´n, F., Montero, F., 1987. Influence of the<br />

hypercyclic organization on the error threshold. J. <strong>Theor</strong>. <strong>Biol</strong>. 127,<br />

393–402.<br />

Gilbert, W., 1986. The RNA world. Nature 319, 618.<br />

Grey, D., Hutson, V., Szathmáry, E., 1995. A re-examination of the<br />

stochastic corrector mo<strong>de</strong>l. Proc. R. Soc. Lond. B 262, 29–35.<br />

Hanczyc, M.M., Fujikawa, S.M., Szostak, J.W., 2003. Experimental<br />

mo<strong>de</strong>ls of primitive cellu<strong>la</strong>r compartments: encapsu<strong>la</strong>tion, growth, and<br />

division. Science 302, 618–622.<br />

Hogeweg, P., Takeuchi, N., 2003. Multilevel selection in mo<strong>de</strong>ls of<br />

prebiotic evolution: compartments and spatial self-organization.<br />

Origins Life Evol. Biosph. 33, 375–403.<br />

Johnston, W.K., Unrau, P.J., Lawrence, M.S., G<strong>la</strong>sner, M.E., Bartel,<br />

D.P., 2001. RNA-catalyzed RNA polymerization: accurate and<br />

general RNA-temp<strong>la</strong>ted primer extension. Science 292, 1319–1325.<br />

Levin, B.R., Kilmer, W.L., 1974. Inter<strong>de</strong>mic selection and the evolution of<br />

altruism: a computer simu<strong>la</strong>tion study. Evolution 28, 527–545.<br />

Luisi, P.L., 1998. About various <strong>de</strong>finitions of life. Origins Life Evol.<br />

Biosph. 28, 613–622.<br />

Maynard Smith, J., 1979. Hypercycles and the origin of life. Nature 280,<br />

445–446.<br />

Maynard Smith, J., 1983. Mo<strong>de</strong>ls of evolution. Proc. R. Soc. Lond. B 219,<br />

315–325.<br />

Maynard Smith, J., Szathmáry, E., 1993. The origins of chromosomes I.<br />

Selection for linkage. J. <strong>Theor</strong>. <strong>Biol</strong>. 164, 437–446.<br />

Maynard Smith, J., Szathmáry, E., 1995. The Major Transitions in<br />

Evolution. Freeman & Co, Oxford.<br />

Michod, R.E., 1983. Popu<strong>la</strong>tion biology of the first replicators: on the<br />

origin of genotype, phenotype, and organism. Am. Zool. 23, 5–14.<br />

Niesert, U., Harnasch, D., Bresch, C., 1981. Origin of life between Scyl<strong>la</strong><br />

and Charybdis. J. Mol. Evol. 17, 348–353.<br />

Nun˜o, J.C., Andra<strong>de</strong>, M.A., Morán, F., Montero, F., 1993. A Mo<strong>de</strong>l of<br />

an autocatalytic network formed by error-prone self-replicative<br />

species. Bull. Math. <strong>Biol</strong>. 55, 385–415.<br />

Nun˜o, J.C., Tarazona, P., 1994. Lifetimes of small catalytic networks.<br />

Bull. Math. <strong>Biol</strong>. 56, 875–898.<br />

Rasmussen, S., Chen, L., Stadler, B.M.R., Stadler, P.F., 2004. Protoorganism<br />

kinetics: evolutionary dynamics of lipid aggregates with<br />

genes and metabolism. Origins Life Evol. Biosph. 34, 171–180.<br />

Santos, M., 1998. Origin of chromosomes in response to mutation<br />

pressure. Am. Nat. 152, 751–756.<br />

Santos, M., Zintzaras, E., Szathmáry, E., 2003. Origins of sex revisited.<br />

Origins Life Evol. Biosph. 33, 405–432.<br />

Scheuring, I., 2000. Avoiding Catch-22 of early evolution by stepwise<br />

increase in copying fi<strong>de</strong>lity. Selection 1, 135–145.<br />

Scheuring, I., Cza´rán, T., Szabo´, P., Károly, G., Toroczkai, Z., 2003.<br />

Spatial mo<strong>de</strong>ls of prebiotic evolution: soup before pizza Origins Life<br />

Evol. Biosph. 33, 319–355.<br />

Silva, A.T.C., Fontanari, J.F., 1999. Deterministic group selection mo<strong>de</strong>l<br />

for the evolution of altruism. Eur. Phys. J. B7, 385–392.<br />

Silvestre, D.M., Fontanari, J.F., 2005. Temp<strong>la</strong>te coexistence in prebiotic<br />

vesicle mo<strong>de</strong>ls. /http://www.arxiv.org/abs/q-bio/0505048S.<br />

Suzuki, H., Ono, N., 2003. Segregational instability un<strong>de</strong>r cell selection<br />

pressure—many chromosome analyses. In: Proceedings of the First<br />

Australian Conference on Artificial Life (ACAL-2003).<br />

Swetina, J., Schuster, P., 1982. Self-replication with errors: a mo<strong>de</strong>l for<br />

polynucleoti<strong>de</strong> replication. Biophys. Chem. 16, 329–345.<br />

Szabó, P., Scheuring, I., Czárán, T., Szathmáry, E., 2002. In silico<br />

simu<strong>la</strong>tions reveal that replicators with limited dispersal evolve<br />

towards higher efficiency and fi<strong>de</strong>lity. Nature 420, 340–343.<br />

Szathmáry, E., 1992. Natural selection and the dynamical coexistence of<br />

<strong>de</strong>fective and complementing virus segments. J. <strong>Theor</strong>. <strong>Biol</strong>. 157,<br />

383–406.<br />

Szathmáry, E., 2003a. Concepts and dynamics: a theoretical issue of<br />

OLEB. Origins Life Evol. Biosph. 33, 313–317.<br />

Szathmáry, E., 2003b. The biological significance of Ga´nti’s work in 1971<br />

and today. In: The Principles of Life, by Gánti T. Oxford University<br />

Press, Oxford, pp. 157–168.<br />

Szathmáry, E., Demeter, L., 1987. Group selection of early replicators and<br />

the origin of life. J. <strong>Theor</strong>. <strong>Biol</strong>. 128, 463–486.<br />

Szostak, J.W., Bartel, D.P., Luisi, P.L., 2001. Synthesizing life. Nature<br />

409, 387–390.<br />

Wa<strong>de</strong>, M.J., 1978. A critical review of the mo<strong>de</strong>ls of group selection. Q.<br />

Rev. <strong>Biol</strong>. 53, 101–114.<br />

Wilson, D.S., 1980. The Evolution of Popu<strong>la</strong>tions and Communities.<br />

Benjamin/Cumings, Menlo Park.<br />

Zintzaras, E., Santos, M., Szathmáry, E., 2002. ‘Living’ un<strong>de</strong>r the<br />

challenge of information <strong>de</strong>cay: the stochastic corrector mo<strong>de</strong>l vs.<br />

hypercycles. J. <strong>Theor</strong>. <strong>Biol</strong>. 217, 167–181.

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