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Papel de las actividades superóxido dismutasa y catalasa en la ...

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3.3. Intestinal microbiota analysis<br />

In or<strong>de</strong>r to compare DGGE patterns of the intestinal microbiota of soles receiving<br />

the differ<strong>en</strong>t diets assayed, two sets of primers, targeting differ<strong>en</strong>t variable regions of<br />

the 16S rRNA g<strong>en</strong>e, were used to select the optimal set with respect to diversity and<br />

resolution. DGGE profiles were compared using Pearson’s simi<strong>la</strong>rity coeffici<strong>en</strong>t<br />

analysis, a test that consi<strong>de</strong>rs quantitative values of a <strong>de</strong>nsitometric curve, repres<strong>en</strong>ting<br />

bands and their int<strong>en</strong>sities.<br />

Profiles were compared within (Table 2) and betwe<strong>en</strong> experim<strong>en</strong>tal groups (Table<br />

3). The results obtained show that the V6-V8 targeting primers Bact-0968-GC-F and<br />

Bact-1401-R <strong>de</strong>tected higher simi<strong>la</strong>rity in DGGE patterns among fish from the same<br />

group (intragroup) in two of the three groups assayed, control group, without any<br />

supplem<strong>en</strong>tation, and fish fed with Pdp11 strain (Table 2). On the other hand, the same<br />

set of primers (Bact-0968-GC-F and Bact-1401-R) <strong>de</strong>tected lower perc<strong>en</strong>tages and more<br />

pronounced differ<strong>en</strong>ces with respect to intergroup simi<strong>la</strong>rities (Table 3). There is only<br />

one statistically significant differ<strong>en</strong>ce (P

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