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166 Godat et al.<br />

4. The MagneHis Ni Particles are pre-equilibrated and can be added directly to<br />

the sample.<br />

5. Resuspend lyophilized DNase I (cat. no. Z358B, Promega) with 80 μl doubledistilled<br />

water. Mix to dissolve the powder completely. Remove the DNase<br />

solution from the vial and add it to 1 ml of double-distilled water. For each<br />

reaction, use 5.8 μl DNase solution + 64.2 μl FastBreak Cell Lysis Reagent, 10×.<br />

6. In cases of very high expression (e.g., 50 mg/l), up to 2 ml of resin per liter of<br />

culture may be needed.<br />

7. We do not recommend adding 500 mM NaCl to the FastBreak Cell Lysis<br />

Reagent, 10×, as it could result in particle clumping during lysis and binding in<br />

this system.<br />

8. Cells should be removed from the medium before protein purification.<br />

9. The amount of imidazole in the washes can be optimized by titrating from<br />

10–100 mM imidazole. The higher the amount of imidazole used for washing,<br />

the less background. However, some tagged protein may elute off.<br />

10. Resuspend lyophilized DNase I (cat. no. Z358B, Promega) with 80 μl doubledistilled<br />

water. Mix to dissolve the powder completely. Remove the DNase<br />

solution from the vial and add it to 1 ml of double-distilled water. For each<br />

reaction use 8 μl DNase solution + 92 μl FastBreak Cell Lysis Reagent, 10×.<br />

11. If you wish to collect the flow through, place an empty deep-well plate on the<br />

manifold bed. On top of the deep-well plate place the manifold collar and insert<br />

the filtration plate onto the collar before transferring the lysate.<br />

References<br />

1. Jung, H., Kim, T., Chae, H.Z., Kim, K-T., and Ha, H.(2001) Regulation of<br />

Macrophage Migration Inhibitory Factor and Thiol-specific Antioxidant Protein<br />

PAG by Direct Interaction. J. Biol. Chem. 276, 15504–15510.<br />

2. Thess, A., Hutschenreiter, S., Hofmann, M., Tampé, R., Baumeister, W., and<br />

Guckenberger, R.(2002) Specific Orientation and Two-Dimensional Crystallization<br />

of the Proteasome at Metal-chelating Lipid Interfaces. J. Biol. Chem. 277,<br />

36321–36328.<br />

3. Fodor, S.K. and Vogt, V.M. (2002) Characterization of the Protease of a Fish<br />

Retrovirus, Walleye Dermal Sarcoma Virus. J. Virol. 76, 4341–4349.<br />

4. Lee, J.H., Voo K.S., and Skalnik, D.G. (2001) Identification and Characterization<br />

of the DNA Binding Domain of CpG-binding Protein. J. Biol. Chem. 276,<br />

44669–44676.<br />

5. Tian, B. and Mathews, M.B. (2001) Functional Characterization of and Cooperation<br />

Between the Double-Stranded RNA-Binding Motifs of the Protein Kinase<br />

PKR. J. Biol. Chem.276, 9936–9944.<br />

6. Wada, M., Miyazawa, H., Wang, R-S., Mizun, T., Sato, A., Asashima, M., and<br />

Hanaoka, F. (2002) The Second Largest Subunit of Mouse DNA Polymerase,<br />

DPE2, Interacts with SAP18 and Recruits the Sin3 Co-Repressor Protein to DNA.<br />

J. Biochem.(Tokyo) 131, 307–311.

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