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Dye Ligand Chromatography 69<br />

6. Secondary screening: Frequently, secondary screening for elution conditions is<br />

useful. Dye affinity resins may bind the protein of interest with high affinity<br />

and prevent good product recovery using the initial elution conditions. In the<br />

secondary screen, focus on the resins that have generated reasonable capacities for<br />

the protein of interest during primary screening. Carry out binding on these resins<br />

using the optimal conditions found in the initial binding study, then vary the elution<br />

condition either by variation in pH or conductivity or through the addition of other<br />

elution modulators: 0.01% Tween, 0.02% Triton X-100, 20% glycerol, 30% ethylene<br />

glycol, 1 M guanidine and 1 M urea, provided that each of these is compatible<br />

with protein activity/stability. The goal is to find an elution condition capable of<br />

eluting the protein of interest quantitatively while preserving any relevant biological<br />

characteristics (full activity, native structure, etc.). In some cases, extremely high<br />

affinity between the ligand and the target protein may preclude the identification<br />

of suitable elution conditions. Usually, a moderate affinity dye ligand can be found<br />

which will release active protein. The chances of finding a moderate affinity dye<br />

ligand are enhanced by screening a large number of resins initially.<br />

References<br />

1. I. M. Chaiken, M. Wilchek, and I. Parikh. (1983) Affinity Chromatography and<br />

Biological Recognition, Academic Press, London.<br />

2. Y. D. Clonis, T. Atkinson, C. J. Bruton, and C. R. Lowe. (1987) Reactive Dyes in<br />

Protein and Enzyme Technology, MacMillan Press, London.<br />

3. N.E. Labrou. (2003) Design and Selection of Ligands for Affinity Chromatography.<br />

J. Chromatogr. A 790, 67–78.<br />

4. R. M. Chicz and F. E. Regnier. (1990) High Performance Liquid Chromatography:<br />

Effective Protein Purification by Various Chromatographic Modes. Methods<br />

Enzymol. 182, 392–421.<br />

5. V. S. Stoll and S. J. Blanchard. (1990) Buffers: Principles and Practice. Methods<br />

Enzymol. 182, 24–38.<br />

6. J. M. Neugebauer. (1990) Detergents: An Overview. Methods Enzymol. 182,<br />

239–253.

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