Species-Specific Identification of Campylobacters by Partial 16S ...

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2538 GORKIEWICZ ET AL. J. CLIN. MICROBIOL. TABLE 1. Sources of 16S rRNA sequences used in this study a Species Strain Source (if known) GenBank accession no. b Reference C. fetus subsp. fetus (n 15) ATCC 27374 T Ovine, France M65012 F-107/4132 Bovine, Australia AF550618 This study F-133/4369 Bovine, Australia (AF550618) This study H00/415 Human, Austria AF550619 This study H97/292 Human, Austria (AF550619) This study H97/343 Human, Austria (AF550619) This study H99/537 Human, Austria (AF550619) This study L487 Human, Austria (AF550619) This study F-RK Human, Austria (AF550619) This study, 25 F1-O2 Bovine, Germany (AF550619) This study F2-B88 Bovine, Austria (AF550619) This study F3-H88 Bovine, Austria (AF550619) This study F4-S88 Bovine, Austria (AF550619) This study F1-B398/2 SK Bovine, Austria (AF550619) This study F-94/4256 Ovine, Australia (AF550619) This study C. fetus subsp. venerealis (n 11) ATCC 19438 T Bovine, England M65011 V1-O1 Germany (AF550619) This study V2-O1 Germany (AF550619) This study V3-O1 Germany (AF550619) This study V4-D96 Bovine, Austria (AF550619) This study V5-G91 Bovine, Austria (AF550619) This study V6-Th15 Bovine, Austria (AF550619) This study V7-Th24 Bovine, Austria (AF550619) This study V-80/4172 Bovine, Australia (AF550619) This study V-108/4111 Bovine, Australia (AF550619) This study V-121/4401 Bovine, Australia (AF550619) This study C. coli (n 11) LMG 9220 Human, Belgium AF550620 This study LMG 15883 Porcine, Australia AF550621 This study LMG 15884 Porcine, Australia AF550622 This study H99/119 Human, Austria AF550623 This study H99/164 Human, Austria (AF550623) This study B99/222 Human, Austria (AF550623) This study H99/155 Human, Austria AF550624 This study B99/131 Human, Austria AF550625 This study B99/90 Human, Austria (AF550625) This study ATCC 33559 T , CCUG 11283 c Porcine, Belgium M59073, L04312 RMIT32A L19738 C. jejuni subsp. jejuni (n 14) LMG 9217 Human, Belgium AF550626 This study B99/207 Human, Austria (AF550626) This study B99/210 Human, Austria (AF550626) This study B99/223 Human, Austria (AF550626) This study H99/241 Human, Austria (AF550626) This study H99/240 Human, Austria AF550628 This study B99/224 Human, Austria AF550629 This study B99/206 Human, Austria AF550630 This study H99/244 Human, Austria (AF550630) This study H99/246 Human, Austria (AF550630) This study H99/245 Human, Austria (AF550630) This study ATCC 33560 T , CCUG 11284 c Bovine M59298, L04315 NCTC 11168 Human AL111168 ATCC 43431 Human Z29326 Downloaded from jcm.asm.org at UNIVERSITATSBIBLIOTHEK on June 1, 2010 C. jejuni subsp. doylei (n 3) LMG 9243 Human, Belgium AF550627 This study CCUG 24567 Human, Australia L14630 SS1-5384-98 Y19244 C. lari (n 6) LMG 7607 Human AF550631 This study LMG 11251 Belgium AF550632 This study LMG 11760 Human, Canada AF550633 This study LMG 14338 Human, Belgium AF550634 This study CCUG23947 T Avian L04316 CF89-12 AB066098 C. sputorum (n 9) LMG 10388 Ovine, Sweden AF550635 This study LMG 11761 Human, Canada AF550636 This study LMG 6617 Ovine AF550637 This study CSP-1 Bovine, Austria AF550638 This study CSP-2 Bovine, Austria AF550639 This study CSP-3 Bovine, Austria (AF550639) This study ATCC 33491 L04319 BU-112B AF022768 LMG7795 T X67775 Continued on following page
VOL. 41, 2003 SPECIES-SPECIFIC IDENTIFICATION OF CAMPYLOBACTERS 2539 TABLE 1—Continued Species Strain Source (if known) GenBank accession no. b Reference C. upsaliensis (n 10) LMG 8851 Human, United Kingdom AF550640 This study LMG 7915 Human, United States (AF550640) This study SK H5 Canine, Germany (AF550640) This study, 33 J31.000 Human, Austria (AF550640) This study LMG 8853 Human, Australia AF550641 This study H29 Canine, Germany AF550642 This study, 33 H37 E/1 Canine, Germany AF550643 This study, 33 H53 E/ccda Canine, Germany AF550644 This study, 33 L461 Human, Austria AF550645 This study CCUG 14913 Canine, Sweden L14628 C. helveticus (n 4) LMG 12639 Feline, Switzerland AF550646 This study CCUG 30563 Feline, Switzerland AF550647 This study CCUG34016 Feline, Sweden AF550648, AF550649 This study NCTC 12470 T Feline U03022 C. curvus (n 5) LMG 11034 Human, United States AF550650 This study LMG 11127 Belgium AF550651 This study LMG 13936 Human, Belgium AF550652 This study ATCC 35224 T Human, United States L04313 C10ETOH L06976 C. concisus (n 5) LMG 7545 Human, Sweden AF550653 This study LMG 7961 Human, Sweden (AF550653) This study LMG 13937 Human, Belgium AF550654 This study ATCC 33237 T Human L04322 FDC 288 Tanner L06977 C. showae (n 3) LMG 12636 Human, United States AF550655 This study CCUG 11641 Human, Sweden L06975 CCUG 30254 T Human, United States L06974 C. gracilis (n 5) LMG 7616 United States AF550656 This study CCUG 13143 Human, United States AF550657 This study CCUG 27721 United States AF550658 This study ATCC 33236 T Human, United States L04320 L37787 C. rectus (n 4) LMG 7611 Human, Sweden AF550659 This study LMG 7612 Human, Sweden (AF550659) This study ATCC 33238 T Human L04317 CCUG 19168 Human, Sweden L06973 C. mucosalis (n 5) ATCC 49352 Porcine, Scotland AF550660 This study ATCC 49353 Porcine, Scotland AF550661 This study ATCC 49354 Porcine, Scotland AF550662 This study ATCC 43265 Porcine AF550663 This study CCUG 6822 T Porcine L06978 C. hyointestinalis subsp. hyointestinalis (n 10) C. hyointestinalis subsp. lawsonii (n 6) H01/12 Human, Austria (AF097681) This study ATCC35217 Porcine, United States M65010 NCTC11608 T Porcine, United States AF097689 19 SVS 3038 Porcine, Denmark AF097691 19 SCRL 0425 Bovine, Scotland AF097681 19 SCRL 0943 Bovine, Scotland AF097682 19 SVS 3035 Porcine, Denmark AF097690 19 MGH 97-2652 AF219235 H00/108 Human, Austria AF499005 17 NADC 2006 M65009 CCUG 27631 Porcine, Sweden AF097683 19 CHY 4 Porcine, England AF097684 19 CHY 5 Porcine, England AF097685 19 CHY 6 Porcine, England AF097686 19 CHY 7 Porcine, England AF097687 19 CHY 8 Porcine, England AF097688 19 C. lanienae (n 5) S-K FAVW Porcine, Austria AF550664 This study NCTC 13004 T Human, Switzerland AF043425 30 UB 994 Human, Switzerland AF043424 30 UB 993 Human, Switzerland AF043423 30 UB 992 Human, Switzerland AF043422 30 C. hominis (n 4) NCTC 13146 T Human, England AJ251584 HS-C Human, England AF062492 HS-B Human, England AF062491 HS-A Human, England AF062490 Downloaded from jcm.asm.org at UNIVERSITATSBIBLIOTHEK on June 1, 2010 a A total of 135 sequences were tested. b The 16S rDNA sequences submitted to GenBank are given in boldface. Campylobacter strains sharing identical sequences are indicated by parentheses and were not submitted to GenBank. c Synonymous strains derived from different culture collections.
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Species-Specific Identification of Campylobacters by Partial 16S ...

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