Package 'MEDIPS' - Bioconductor
Package 'MEDIPS' - Bioconductor
Package 'MEDIPS' - Bioconductor
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6 MEDIPS.correlation<br />
Value<br />
The annotation function returns a matrix where the rows contain the regions from the given frames<br />
object (here DMRs) and the columns are:<br />
chr<br />
start<br />
stop<br />
annotation<br />
the chromosome name of the DMR<br />
the start position of the DMR<br />
the stop position of the DMR<br />
the name of the annotation<br />
Author(s)<br />
Joern Dietrich, Matthias Lienhard<br />
Examples<br />
print("The function has been deprecated. Please see MEDIPS.getAnnotation and MEDIPS.setAnnotation instead.")<br />
MEDIPS.correlation<br />
Calculates pairwise Pearson correlations between provided MEDIPS<br />
SETs<br />
Description<br />
The function calculates genome wide Pearson correlations between all pairs of provided MEDIPS<br />
SETs.<br />
Usage<br />
MEDIPS.correlation(MSets=NULL, plot = T, method="pearson")<br />
Arguments<br />
MSets<br />
plot<br />
method<br />
a concatenated set of MEDIPS SETs<br />
if specified, the correlation will be depicted as a scatter plot<br />
default: pearson; alternatives: kendall, spearman<br />
Value<br />
a correlation matrix<br />
Author(s)<br />
Lukas Chavez
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