Dynamic Programing
Dynamic Programing Dynamic Programing
Smith-Waterman Algorithm (Cont.)
Smith-Waterman Algorithm (Cont.) w1 ... wj ... wm 0 0 0 0 0 0 v1 0 (III) (I) : 0 +s(vi, wj) +gap vi 0 (II) +gap : 0 vn 0
- Page 1 and 2: Dynamic Programming and Pairwise Se
- Page 3 and 4: Importance of Sequence Alignment
- Page 5 and 6: Alignment Operation Transforming on
- Page 7 and 8: Difficulties in measuring sequence
- Page 9 and 10: Efficient way to find a best alignm
- Page 11 and 12: Problems Solvable by Dynamic Progra
- Page 13: Property of DP problems • Have ov
- Page 16 and 17: I. Global Alignment Classes of Pair
- Page 18 and 19: Classes of Pairwise Alignment: I. G
- Page 20 and 21: Classes of Pairwise Alignment: I. G
- Page 22 and 23: Global Alignment spans all the resi
- Page 24 and 25: Scoring matrix represents a specifi
- Page 26 and 27: Needleman-Wunsch Algorithm (Cont.)
- Page 28 and 29: Needleman-Wunsch Algorithm (Cont.)
- Page 30 and 31: Needleman-Wunsch Algorithm (Cont.)
- Page 32 and 33: Needleman-Wunsch Algorithm Efficien
- Page 34 and 35: Needleman-Wunsch Algorithm for any
- Page 36 and 37: Needleman-Wunsch Algorithm for any
- Page 38 and 39: Local Alignment finds the most simi
- Page 42 and 43: Smith-Waterman Algorithm (Cont.) v1
- Page 44 and 45: Smith-Waterman Algorithm (Cont.) Ex
- Page 46 and 47: Which alignment to use Example 1. O
- Page 48 and 49: Which alignment to use Example 1. O
- Page 50 and 51: Which alignment to use Example 1. O
- Page 52 and 53: Which alignment to use example 1 co
- Page 54 and 55: Which alignment to use (Cont.) Exam
- Page 56 and 57: Versatility of DP Algorithm • Mem
- Page 58 and 59: References - Gusfield D. Algorithms
Smith-Waterman Algorithm (Cont.)<br />
w1 ... wj ... wm<br />
0 0 0 0 0 0<br />
v1 0<br />
(III)<br />
(I)<br />
: 0<br />
+s(vi, wj) +gap<br />
vi 0<br />
(II) +gap<br />
: 0<br />
vn 0
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