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High performance capillary electrophoresis - T.E.A.M.

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Modes<br />

CGE<br />

t = 0<br />

t > 0<br />

Polymer matrix<br />

Figure 41<br />

Size-separation in CGE<br />

hindered more than smaller ones. Macromolecules such<br />

as DNA and SDS-saturated proteins cannot be separated<br />

without a gel since they contain mass-to-charge ratios that<br />

do not vary with size. That is, with DNA for example, each<br />

additional nucleotide added to a DNA chain adds an equivalent<br />

unit of mass and charge and does not affect the mobility<br />

in free solution.<br />

Capillary gel <strong>electrophoresis</strong> (CGE) is directly comparable<br />

to traditional slab or tube gel <strong>electrophoresis</strong> since the<br />

separation mechanisms are identical. The CE format can<br />

offer a number of advantages over traditional slab gel<br />

<strong>electrophoresis</strong>, including the use of 10 to 100 times higher<br />

electric fields without the deleterious effects of Joule<br />

heating (although ultra-thin slab gels have recently been<br />

used to limit heating), on-<strong>capillary</strong> detection, and instrumental<br />

automation. In addition, due to the anticonvective nature<br />

of the <strong>capillary</strong> it is not necessary to use a gel that is itself<br />

anticonvective. The capacity to run preparative separations,<br />

considered a major advantage of the slab, can also<br />

be accomplished to a certain extent in HPCE by the use of<br />

wide-bore capillaries (internal diameters >100 to 200 mm)<br />

and low electric fields. The multi-lane capacity of a slab,<br />

however, is difficult to reproduce in <strong>capillary</strong> format,<br />

although the rapid analysis times in CGE compensate.<br />

Traditionally, crosslinked polyacrylamide and agarose have<br />

been used in the slab or tube format. The former usually has<br />

70

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