2006 Graduate Catalog and 2005 Annual R & D Report - Sirindhorn ...

2006 Graduate Catalog and 2005 Annual R & D Report - Sirindhorn ... 2006 Graduate Catalog and 2005 Annual R & D Report - Sirindhorn ...

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2006 Graduate Catalog and 2005 Annual R & D Report Sirindhorn International Institute of Technology (SIIT) Dr. Luckhana Lawtrakul Assistant Professor B.Sc. in Chemistry, Kasetsart University, Thailand M.Sc. in Physical Chemistry, Kasetsart University, Thailand Dr.rer.nat. in Theoretical Biochemistry, University of Vienna, Austria Areas of Specialization: Computational Chemistry, Computer-Aided Molecular Modeling and Molecular Design, Structure-Activity Relationships, Conformational Analysis, Protein-Ligand Interaction. Research Interest: Computer-Aided Molecular Modeling and Molecular Design Computational quantum chemistry uses theoretical and computational methods through mathematical models for describing and understanding the movement and function of electrons in molecules and to apply the theoretical methods to significant problems of broad chemical interest. The research entails the use of computational methods to develop novel bioactive compounds that are effective in therapeutic treatment of various human ailments with minimal side effects. Two approaches are possible, indirect design, based on the study of the molecular determinants of recognition and activation of the ligands themselves, and direct design, in which the structure of the target receptor or enzyme (known or modeled) is employed for the design of ligands with optimal bioactivity. Currently applications in this area are of special concern: Molecular Dynamics Simulations of Mutant Types of HIV-1 Reverse Transcriptase: Structural Information for Drug Development. Dr. Pakorn Opaprakasit Assistant Professor B.Sc. (1 st Class Honors) in Science (Chemistry), Chiang Mai University, Thailand. M.S. in Materials Science and Engineering (Polymer Option), the Pennsylvania State University, Pennsylvania, USA. Ph.D. in Materials Science and Engineering, the Pennsylvania State University, Pennsylvania, USA. Areas of Specialization: Thermal properties and degradation of polylactide, Rapid prototyping of natural rubber and polylactide, Conventional and two-dimensional FTIR spectroscopy, Structures and properties of piezoelectric polymers, biocompatible/biodegradable polymers, coal/fossil fuels, and clay minerals. Research Interests: Thermal Properties and Degradation of Polylactide Polylactic acid or polylactide (PLA) is well known as biodegradable and biocompatible thermoplastic and both are of interest in various medical applications. Their enzymatic degradability and mechanical properties, which are comparable to those of PE and PS, have also attracted interest in using these degradable polymers as packaging materials. Most importantly, the monomer constituents of these polymers can be derived from agricultural resources such as carbohydrates. A racemic crystal structure or stereocomplex can be achieved by mixing two polylactides with opposite configurations: poly L- lactide (L-PLA) and poly D-lactide (D-PLA). This stereocomplex, in turn, shows a higher melting temperature than that of its homopolymer counterpart. Accordingly, stereocomplexes have been used as potentially high performance biodegradable materials. Current research is focused on the mechanism and dynamics of crystallization and degradation processes of these polylactides and their stereocomplexes. Conventional and Two-Dimensional FTIR Spectroscopy Infrared spectroscopy is a fundamental analytical technique that is widely used in material characterization. Recently, an advanced methodology, two-dimensional infrared spectroscopy (2D-FTIR) has been developed as a novel data analysis and presentation technique. This technique has provided notable advantages over conventional FTIR. For example, an improvement in band resolution, simplicity in band assignment, and determination of relative order of responses of specific functional groups to external perturbation, have been achieved. The 2D-FTIR has been applied to study effects of mechanical and electrical perturbations on the structural transition of PVDF/TrFE/CTFE piezoelectric polymer, and to investigate crystallization of biodegradable polymer, polylactide. Structures and Properties of Coal Coal is formed by an accumulation of various types of organic precursors, making it a highly heterogeneous material. Although research on coal has been carried out for over half a century, several issues remain unresolved due to its heterogeneous nature. The nature of the coal network and the existence of the glass transition temperature (Tg) in coal are among those controversial issues. The former issue has been studied by conducting experiments on a polymeric model that has a similar but less complex structure. The latter is investigated by employing a novel polymer blend methodology. 38

2006 Graduate Catalog and 2005 Annual R & D Report Sirindhorn International Institute of Technology (SIIT) Dr. Ruben N. Mera Assistant Professor B. Math, University of the Republic Montevideo, Uruguay M.Sc. Mathematical Statistics, CIENES, Santiago, Chile D.E.A. Probability, University of Paris VI, France Ph.D. Mathematics, Auburn University, Alabama, USA Areas of Specialization: Complex-survey designs, Complex variables. Research Interests: Complex-Survey Designs and Estimation A complex-survey design incorporates elements such as stratification, clustering, unequal inclusion probabilities, and weighting, among others. Under a complex design, observations do not follow the standard assumptions of Independent Identically Distributed (IID) observations of classic statistical analysis. Missing values induce bias, and imputation contributes to inflate variances. The way these different factors interact is not well known. Survey designs must integrate all the components of the population structure. Estimation and variance estimation must account for all the complexities of the design. Disclosure Avoidance Government agencies are required to protect respondents’ confidentiality, both to comply with law requisites as well as to insure an accurate data collection. The public release of microdata prompts the risk of identification of a respondent by a third party. Masking techniques, such as data disturbance or swapping, to avoid the linking of observations to respondents, are typical methods to prevent identity disclosure. Masking procedures, however, distort the data and induce bias. The challenge is to produce public data files that are representative of the population and, at the same time, insure the respondents’ privacy. Best Polynomial Interpolation The field of polynomial interpolation and approximation has been exhaustively investigated in the past. Diverse methods were developed for constructing polynomials such that, the polynomial and some of its derivatives agree on a set of given points with the values of the function and its derivatives. The choice of the points to obtain the best approximating polynomial, however, has not been explored in detail. Research on the best approximating polynomial is, therefore, of interest to pursue. Dr. Thawatchai Onjun Lecturer B.S. in Physics, University of Rochester, Rochester, New York, USA M.S. in Physics, Lehigh University, Bethlehem, Pennsylvania, USA Ph.D. in Physics, Lehigh University, Bethlehem, Pennsylvania, USA Areas of Specialization: Theoretical and computational plasma physics. Research Interest: Theoretical and Computational Plasma Physics Fusion-related research with focus on thermal and particle transport such as predicting the time evolution of temperature and density profiles in tokamaks using an integrated modeling approach. Integrated modeling is an important element of tokamak fusion research that contributes in an essential way to the interpretation and planning of experiments, validation of theory against experimental results, development of plasma control techniques, and the design of next step devices such as ITER. Research is closely related to ongoing and proposed experiments at major fusion laboratories. 39

<strong>2006</strong> <strong>Graduate</strong> <strong>Catalog</strong> <strong>and</strong> <strong>2005</strong> <strong>Annual</strong> R & D <strong>Report</strong><br />

<strong>Sirindhorn</strong> International Institute of Technology (SIIT)<br />

Dr. Luckhana Lawtrakul<br />

Assistant Professor<br />

B.Sc. in Chemistry, Kasetsart University, Thail<strong>and</strong><br />

M.Sc. in Physical Chemistry, Kasetsart University, Thail<strong>and</strong><br />

Dr.rer.nat. in Theoretical Biochemistry, University of Vienna, Austria<br />

Areas of Specialization: Computational Chemistry, Computer-Aided Molecular Modeling <strong>and</strong> Molecular<br />

Design, Structure-Activity Relationships, Conformational Analysis, Protein-Lig<strong>and</strong> Interaction.<br />

Research Interest:<br />

Computer-Aided Molecular Modeling <strong>and</strong><br />

Molecular Design<br />

Computational quantum chemistry uses theoretical<br />

<strong>and</strong> computational methods through mathematical<br />

models for describing <strong>and</strong> underst<strong>and</strong>ing the<br />

movement <strong>and</strong> function of electrons in molecules <strong>and</strong><br />

to apply the theoretical methods to significant<br />

problems of broad chemical interest. The research<br />

entails the use of computational methods to develop<br />

novel bioactive compounds that are effective in<br />

therapeutic treatment of various human ailments with<br />

minimal side effects. Two approaches are possible,<br />

indirect design, based on the study of the molecular<br />

determinants of recognition <strong>and</strong> activation of the<br />

lig<strong>and</strong>s themselves, <strong>and</strong> direct design, in which the<br />

structure of the target receptor or enzyme (known or<br />

modeled) is employed for the design of lig<strong>and</strong>s with<br />

optimal bioactivity. Currently applications in this area<br />

are of special concern: Molecular Dynamics<br />

Simulations of Mutant Types of HIV-1 Reverse<br />

Transcriptase: Structural Information for Drug<br />

Development.<br />

Dr. Pakorn Opaprakasit<br />

Assistant Professor<br />

B.Sc. (1 st Class Honors) in Science (Chemistry), Chiang Mai University, Thail<strong>and</strong>.<br />

M.S. in Materials Science <strong>and</strong> Engineering (Polymer Option), the Pennsylvania State University,<br />

Pennsylvania, USA.<br />

Ph.D. in Materials Science <strong>and</strong> Engineering, the Pennsylvania State University, Pennsylvania, USA.<br />

Areas of Specialization: Thermal properties <strong>and</strong> degradation of polylactide, Rapid prototyping of natural<br />

rubber <strong>and</strong> polylactide, Conventional <strong>and</strong> two-dimensional FTIR spectroscopy, Structures <strong>and</strong> properties of<br />

piezoelectric polymers, biocompatible/biodegradable polymers, coal/fossil fuels, <strong>and</strong> clay minerals.<br />

Research Interests:<br />

Thermal Properties <strong>and</strong> Degradation of<br />

Polylactide<br />

Polylactic acid or polylactide (PLA) is well known as<br />

biodegradable <strong>and</strong> biocompatible thermoplastic <strong>and</strong><br />

both are of interest in various medical applications.<br />

Their enzymatic degradability <strong>and</strong> mechanical<br />

properties, which are comparable to those of PE <strong>and</strong><br />

PS, have also attracted interest in using these<br />

degradable polymers as packaging materials. Most<br />

importantly, the monomer constituents of these<br />

polymers can be derived from agricultural resources<br />

such as carbohydrates. A racemic crystal structure or<br />

stereocomplex can be achieved by mixing two<br />

polylactides with opposite configurations: poly L-<br />

lactide (L-PLA) <strong>and</strong> poly D-lactide (D-PLA). This<br />

stereocomplex, in turn, shows a higher melting<br />

temperature than that of its homopolymer counterpart.<br />

Accordingly, stereocomplexes have been used as<br />

potentially high performance biodegradable materials.<br />

Current research is focused on the mechanism <strong>and</strong><br />

dynamics of crystallization <strong>and</strong> degradation<br />

processes of these polylactides <strong>and</strong> their stereocomplexes.<br />

Conventional <strong>and</strong> Two-Dimensional FTIR<br />

Spectroscopy<br />

Infrared spectroscopy is a fundamental analytical<br />

technique that is widely used in material<br />

characterization. Recently, an advanced<br />

methodology, two-dimensional infrared spectroscopy<br />

(2D-FTIR) has been developed as a novel data<br />

analysis <strong>and</strong> presentation technique. This technique<br />

has provided notable advantages over conventional<br />

FTIR. For example, an improvement in b<strong>and</strong><br />

resolution, simplicity in b<strong>and</strong> assignment, <strong>and</strong><br />

determination of relative order of responses of<br />

specific functional groups to external perturbation,<br />

have been achieved. The 2D-FTIR has been applied<br />

to study effects of mechanical <strong>and</strong> electrical<br />

perturbations on the structural transition of<br />

PVDF/TrFE/CTFE piezoelectric polymer, <strong>and</strong> to<br />

investigate crystallization of biodegradable polymer,<br />

polylactide.<br />

Structures <strong>and</strong> Properties of Coal<br />

Coal is formed by an accumulation of various types of<br />

organic precursors, making it a highly heterogeneous<br />

material. Although research on coal has been carried<br />

out for over half a century, several issues remain<br />

unresolved due to its heterogeneous nature. The<br />

nature of the coal network <strong>and</strong> the existence of the<br />

glass transition temperature (Tg) in coal are among<br />

those controversial issues. The former issue has<br />

been studied by conducting experiments on a<br />

polymeric model that has a similar but less complex<br />

structure. The latter is investigated by employing a<br />

novel polymer blend methodology.<br />

38

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