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2 attributePages getBM . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5 getBMlist . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6 getGene . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 7 getLDS . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8 getSequence . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 9 getXML . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 10 listAttributes . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 11 listDatasets . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 12 listFilters . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 12 listMarts . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 13 Mart-class . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 14 NP2009code . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 14 select-methods . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 15 useDataset . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 16 useMart . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 17 Index 19 attributePages Gives a summary of the attribute pages Description Attributes in BioMart databases are grouped together in attribute pages. The attributePages function gives a summary of the attribute categories and groups present in the BioMart. These page names can be used to display only a subset of the available attributes in the listAttributes function. Usage attributePages(mart) Arguments mart object of class Mart, created with the useMart function. Author(s) Steffen Durinck Examples if(interactive()){ mart = useMart("ensembl", dataset="hsapiens_gene_ensembl") attributeSummary(mart) }
exportFASTA 3 exportFASTA Exports getSequence results to FASTA format Description Exports getSequence results to FASTA format Usage exportFASTA(sequences, file) Arguments sequences file A data.frame that was the output of the getSequence function File to which you want to write the data Author(s) Steffen Durinck Examples if(interactive()){ mart
Page 1: Package ‘biomaRt’ May 22, 2014
Page 5 and 6: getBM 5 getBM Retrieves information
Page 7 and 8: getGene 7 Examples if(interactive()
Page 9 and 10: getSequence 9 Examples if(interacti
Page 11 and 12: listAttributes 11 Examples if(inter
Page 13 and 14: listMarts 13 Arguments mart what ob
Page 15 and 16: select-methods 15 select-methods Re
Page 17 and 18: useMart 17 Examples if(interactive(
Page 19: Index ∗Topic methods attributePag

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