ABI PRISM 7000 Sequence Detection Systems Relative ...

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Appendix B • The Start menu location for the 7000 SDS software shortcut: Start\Programs\ABI Prism 7000\ABI Prism 7000 SDS Software IMPORTANT! The installer program creates a link to the ABI PRISM 7000 SDS Software by placing a shortcut icon on the desktop during the installation. Clicking the icon opens the program from the desktop without having to go through the Start menu. DRAFT September 26, 2003 3:17 pm, RQGSG_AppendixInstall.fm Notes 50 Relative Quantification Getting Started Guide for 7000 v1.1
Index SAMPLE DOCUMENT September 26, 2003 3:14 pm, RQGSG_IX.fm Numerics 5’-nuclease assay 11 9600 Emulation Mode 26 A ABI PRISM® 7000 Sequence Detection System 1 absolute quantification 2 Absolute Quantification (AQ) Assay 1 add-on software for RQ studies 49 AIF. See assay information files Allelic Discrimination (AD) Assay 1 AmpErase UNG 12 amplification plots Amplification Plot view for RQ plates 29 representative 27 types of amplification plots for RQ studies 37 Analysis Settings dialog box 35 Applied Biosystems contacting viii, 2 customer feedback on documentation viii Services and Support viii, 2 Technical Communications viii Technical Support viii, 2 Assay Design Guidelines 13, 21 assay information files 48 assay types 1 Assays-by-Design 13 Assays-on-Demand 13 Australian EMC standards xvi B baseline 27 biological hazard safety xv C calibrating the 7000 SDS instrument 19 calibrator definition 9 selecting in RQ studies 35 Canadian safety standards xvi CAUTION, description x cDNA generating 16 storing 17 chemical safety guidelines xiii comparative method of calculation 3, 33 Component view 28 confidence levels 35 contamination, preventing 19 conventions text vii Ct vs. Well Position view 37 Ct. See threshold cycle curves, standard 2 Relative Quantification Getting Started Guide for 7000 v1.1 51 D DANGER, description x data analyzing 27, 37 exporting 30, 43 generating PCR data from RQ plates 26 omitting from a study 41 delta Rn 27 Delta Rn vs.Cycle view 37 designing RQ experiments determining reagent configuration 11 PCR method 7 primers and probes 13 selecting an SDS chemistry 11 workflow 7 Detector Manager dialog box 23, 47 detector tasks definition 22 specifying for RQ plates 24 detectors adding to RQ plates 23 creating 47 definition 47 selecting for RQ studies 35 documentation feedback viii documents exporting 30, 43 importing 24 RQ Plate 22
Page 1 and 2:
5′ cDNA Reverse Primer Oligo d(T)
Page 3 and 4:
Primer Extended on mRNA 5′ 3′ 5
Page 5 and 6:
Chapter 5 Performing an RQ Study 33
Page 7 and 8:
Preface How to Use This Guide Purpo
Page 9 and 10:
Safety and EMC Compliance Informati
Page 11 and 12:
Symbols on Instruments Electrical S
Page 13 and 14:
Chemical Safety Chemical Hazard War
Page 15 and 16:
Physical Hazard Safety Ultraviolet
Page 17 and 18: Safety and Electromagnetic Compatib
Page 19 and 20: Introduction 1 About the 7000 SDS I
Page 21 and 22: About the Sample RQ Experiment Desc
Page 23 and 24: Materials and Equipment Description
Page 25 and 26: Primer Extended on mRNA 5′ 3′ 5
Page 27 and 28: Specifying the Components of an RQ
Page 29 and 30: Selecting the Sequence Detection Ch
Page 31 and 32: Choosing the Probes and Primers Abo
Page 35 and 36: 5′ 3′ 5′ cDNA Reverse Primer
Page 39 and 40: Preparing the PCR Master Mix Preven
Page 41 and 42: Creating an RQ Plate Document Detec
Page 43 and 44: Specifying Thermal Cycling Conditio
Page 45 and 46: Analyzing and Viewing RQ Plate Data
Page 47 and 48: Analyzing and Viewing RQ Plate Data
Page 49 and 50: Exporting RQ Plate Documents Reanal
Page 53 and 54: Creating an RQ Study Document 5. Co
Page 55 and 56: Analyzing and Viewing the Results o
Page 57 and 58: Analyzing and Viewing the Results o
Page 59 and 60: Omitting Samples from a Study Omitt
Page 61 and 62: Exporting RQ Study Results Exportin
Page 63 and 64: References Kwok, S. and Higuchi, R.
Page 65 and 66: Creating Detectors A Before you can
Page 67: Upgrading the 7000 Software with RQ
Page 71 and 72: Index SAMPLE DOCUMENT September 26,
Page 73 and 74: DRAFT September 26, 2003 3:17 pm, G
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