Package 'MotIV' - Bioconductor

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6 exportAsTransfacFile Author(s) Eloi Mercier Examples #####Database and Scores##### path
filter 7 Arguments x file An object of class motiv to be export. A character string naming a file. Details This function is made to provide standard output file used by STAMP. It take an object of class motiv and write two files named *_matched.txt and *_match_pairs.txt containing alignments and identified PWMs. For more information about the Transfac file format, please refere to http://www.benoslab.pitt.edu/stamp/help.html. Author(s) Eloi Mercier Examples #####Database and Scores##### path
Page 1 and 2: Package ‘MotIV’ May 22, 2014 Ty
Page 3 and 4: as.data.frame 3 See Also motiv , ma
Page 5: exportAsRangedData 5 Examples #####
Page 9 and 10: filter-class 9 foxa1.filter.combine
Page 11 and 12: generateDBScores 11 References http
Page 13 and 14: getGademPWM 13 getGademPWM Recover
Page 15 and 16: makePWM 15 Examples #####Database a
Page 17 and 18: motifMatch 17 Arguments Details inp
Page 19 and 20: motiv-class 19 motifs
Page 21 and 22: occurences 21 occurences Motifs Occ
Page 23 and 24: plot-methods 23 Giving a motiv obje
Page 25 and 26: seqLogo2 25 Arguments file Transfac
Page 27 and 28: split-methods 27 Value A filter obj
Page 29 and 30: transcriptionFactor-class 29 transc
Page 31 and 32: viewMotifs-methods 31 Examples ####
Page 33 and 34: Index ∗Topic classes alignments-c

Package 'MotIV' - Bioconductor

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