Package 'MotIV' - Bioconductor
Package 'MotIV' - Bioconductor
Package 'MotIV' - Bioconductor
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20 motiv-methods<br />
motiv-methods<br />
Motiv methods<br />
Description<br />
Usage<br />
Methods for motiv objects.<br />
## S4 method for signature motiv<br />
summary(object)<br />
## S4 method for signature motiv<br />
names(x)<br />
## S4 method for signature motiv<br />
length(x)<br />
## S4 method for signature motiv<br />
similarity(x)<br />
## S4 method for signature motiv<br />
x[i,j=ANY, bysim=TRUE, ...,exact=TRUE, ignore.case=FALSE, drop=FALSE]<br />
Arguments<br />
object<br />
x<br />
i<br />
j<br />
bysim<br />
An object of class motiv.<br />
An object of class motiv.<br />
A string reprsenting a motif name.<br />
NOT USED.<br />
If TRUE, select by similarity name.<br />
... Further potential arguments passed to methods.<br />
ignore.case<br />
exact<br />
drop<br />
Author(s)<br />
See Also<br />
if FALSE, the pattern matching is case sensitive and if TRUE, case is ignored<br />
during matching<br />
If TRUE, search only for perfect name match.<br />
If TRUE, no match motifs will be dropped.<br />
Eloi Mercier <br />
matches , alignments, tf<br />
Examples<br />
showClass("motiv")
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