Gene gain and loss: aCGH ISA CGH
Gene gain and loss: aCGH ISA CGH Gene gain and loss: aCGH ISA CGH
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29.11.2014
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Array CGH
ISA CGH ISACGH allows visualiz in g array CGH d ata or/ an d exp ression arrays on to h u m an or m ou se ch rom osom al coord in ates (au tom atically fou n d th rou gh th eir stan d ard id en tifiers) an d rep resen ts th e cop y n u m ber alteration s fou n d by u sin g d ifferen t m eth od s. Correlation s between cop y n u m ber an d gen e exp ression level can easily be observed in a p lot. Th e p rogram allows fin d in g m in im al com m on region s with altered cop y n u m ber across d ifferen t arrays. http://isacgh.bioinfo.cipf.es
- Page 1 and 2: Gene gain and los s : aCGH ISA CGH
- Page 3 and 4: CNV/ CNP Cop y n u m ber variation
- Page 5 and 6: 1. Clon es to cover a gen om ic reg
- Page 7: Array CGH Adv antage ● An alysis
- Page 11 and 12: General outline INPUT: gen e exp re
- Page 13 and 14: Genomic copy num ber es tim ation S
- Page 15 and 16: Plotting data and copy num ber es t
- Page 17 and 18: Minim al com m on regions w ith con
- Page 19 and 20: Functional annotation of altered co
- Page 21 and 22: An exam ple
- Page 23 and 24: 2. CGH array data Ejem plo
- Page 25 and 26: 4. Gender labels (optional) Ejem pl
- Page 27 and 28: 6. Gene expression data Ejem plo
- Page 29 and 30: 8. Scale value (optional) Ejem plo
- Page 31 and 32: 9. Reference lines (optional) Ejem
- Page 33 and 34: Ejem plo 10. If you have replicates
- Page 35 and 36: Ejem plo 11. Choose the representat
- Page 37 and 38: Ejem plo 13. Download data form reg
- Page 39 and 40: Ejem plo 15. Zoom y functional anal
- Page 41 and 42: Ejem plo 15. Zoom y functional anal
- Page 43 and 44: http://gepas.bioinfo.cipf.es/cgib
Array <strong>CGH</strong>
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