Package 'charm' - Bioconductor
Package 'charm' - Bioconductor
Package 'charm' - Bioconductor
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18 maxDensity<br />
Arguments<br />
dat<br />
controlProbes<br />
noCpGWindow<br />
subject<br />
onlyGood<br />
matrix<br />
TilingFeatureSet<br />
vector of names used to denote control probes in the ’container’ column of the<br />
Nimblegen annotation (ndf) file. Optional<br />
Size of the window centered on the probe that must be CpG-free<br />
A BSgenome object<br />
deprecated option<br />
deprecated option<br />
Details<br />
The probes can either be identified as control probes in the microarray annotation package, or alternatively<br />
the function will search the genome (given an appropriate BSgenome object) for suitable<br />
probes.<br />
Value<br />
a vector<br />
Author(s)<br />
Martin Aryee <br />
Examples<br />
# See dmrFdr<br />
maxDensity<br />
Find the mode of a density function<br />
Description<br />
Calculate a density function and find the max point<br />
Usage<br />
maxDensity(x, n.pts = 2^14, minPoints=30)<br />
Arguments<br />
x<br />
n.pts<br />
minPoints<br />
a data vector<br />
Number of points to use in density estimation<br />
Minimum number of data points to accept
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