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EMBO WORKSHOP 2005 - Istituto Pasteur

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Chromosome Structural Elements/Rome <strong>2005</strong><br />

<strong>EMBO</strong> <strong>WORKSHOP</strong> <strong>2005</strong><br />

CHROMOSOME STRUCTURAL ELEMENTS: FROM DNA SEQUENCE TO FUNCTION<br />

Villa Mondragone, Monte Porzio Catone, Rome, Italy<br />

September 29-October 3, <strong>2005</strong><br />

Organizer:<br />

Fiorentina Ascenzioni, Dipartimento di Biologia Cellulare e dello Sviluppo, University of Rome<br />

“La Sapienza”, via dei Sardi 70, 00185 Rome, Italy<br />

Co-organizers:<br />

- Silvia Bacchetti, <strong>Istituto</strong> Regina Elena, via delle Messi d’Oro, 156, 00158 Rome, Italy<br />

- Giuseppe Novelli, Dipartimento di Biopatologia e Diagnostica, University of Rome Tor<br />

Vergata, via Montepellier 1, 00133 Rome, Italy<br />

- Maria Savino, Dipartimento di Genetica e Biologia Molecolare, University of Rome “La<br />

Sapienza”, P.le Aldo Moro 5, 00185 Rome, Italy<br />

Person to whom enquiries may be addressed: Fiorentina Ascenzioni,<br />

e-mail: fiorentina.ascenzioni@uniroma1.it<br />

1


Chromosome Structural Elements/Rome <strong>2005</strong><br />

Workshop Programme<br />

Talks (T) 25 min + 5 min discussion; Short Talks (ST): 12 min + 3 min discussion, P, Posters<br />

29/09/<strong>2005</strong> Thursday<br />

4-6 pm: Registration, hanging of posters<br />

6 pm: Welcoming remarks: Silvia Bacchetti/Fiorentina Ascenzioni<br />

6:15-7:15 pm: Lecture: Lucio Luzzatto (IT), Chromosomal and molecular basis of<br />

cancer.<br />

Cocktails<br />

30/09/<strong>2005</strong> Friday<br />

9.00-10.30am Session 1: Telomeres: structure, proteins and positioning<br />

Chair: P. Donini (IT)<br />

9:00 T1- Patrick Kaminker (USA), Dual function for a telomere-associated protein?<br />

9:30 T2- Daniela Rhodes (UK), Towards the structure of the “30 nm” chromatin fiber.<br />

10:00 ST1- Heico Schoiber (CH), Telomerase Helps Tether Telomeric Chromatin to the<br />

Nuclear Periphery via Interaction with yKu<br />

10.30-11.00am Coffee break<br />

11 am -12.30pm<br />

11:00 T3- Stefano Cacchione (IT), The role of DNA sequence in telomeric chromatin features<br />

11:30 T4- Hans Lipps (DE), Telomere end-binding proteins control the formation of G-<br />

quadruplex DNA structures in vivo.<br />

12:00 ST2- K. Lemke (Poland). Interaction of antitumor triazoloacridone C-1305 with guaninerich<br />

DNA: induction of structural changes in guanine triplets and stabilization of G-quadruplexes<br />

12:15 ST3- H. Renauld (USA), Interstitial (sub)telomeric repeats: Punctuation marks of genome<br />

dynamics?<br />

12.30-2pm Lunch<br />

2-4.30pm Session 2: Telomere replication and telomere length regulation<br />

Chair: Virginia Zakian (USA)<br />

2:00 T5- Virginia Zakian (USA), Pif1p family helicases: effects on telomerase.<br />

2:30 T6- Eric Gilson (FR), New pathways of telomere length regulation in yeast.<br />

3:00 T7- Arturo Londoňo-Vallejo (FR), Telomere homeostasis in humans: length control at<br />

cell and single telomere levels.<br />

3:30 ST4- S. Bekaert (Belgium), Reference values and basic determinants of telomere length<br />

in a large middle-aged population.<br />

3:45 ST5- D. Baird (UK), Telomere dynamics and instability.<br />

4:00 ST6- M.A. Cerone (Canada) A human cell line that maintains telomeres in the absence of<br />

telomerase and of key markers of ALT.<br />

2


Chromosome Structural Elements/Rome <strong>2005</strong><br />

4.15 ST7- C.M. Counter (USA) Loss of hPot1 function leads to telomere instability and a cutlike<br />

phenotype.<br />

4.30-5.00pm Coffee break<br />

5:00-7:15pm Session 3: Chromosome replication and disjunction<br />

Chair: Hans Lipps (DE)<br />

5:00 T8- Michelle Debatisse (FR), Dynamics of DNA replication in mammalian somatic cells<br />

5:30 T9- Silvano Riva (IT), Functional analysis of a human DNA replicator.<br />

6:00 T10- Susan Smith (USA), Telomeres require special mechanisms for their compaction<br />

and resolution at mitosis.<br />

6:30 ST8- Peter Meister (CH), Spatial and temporal separation of replication and<br />

recombination requires the intra-S checkpoint<br />

6:45 ST9- M. Cornfort (USA), Excess of Radiation-Induced Dicentrics Involving Homologous<br />

Chromosomes.<br />

7:00 ST10- B. Meier (USA), The C. elegans catalytic subunit of telomerase TRT-1 and DNA<br />

damage signaling.<br />

7.15 ST11- S. Bailey (USA), Telomeres and Double-Strand Breaks: Tying up Loose Ends.<br />

01/10/<strong>2005</strong> Saturday<br />

9.00-10.30am Session 4: Centromeres, DNA sequences and chromatin plasticity<br />

Chair: Brenda Grimes (USA)<br />

9:00 T11- Beth A. Sullivan (USA), Centromeric Chromatin is a Continuous, Dynamic<br />

Domain that Permits Gene Expression<br />

9:30 T12- Christine Farr (UK), Topoisomerase II: untangling its contribution at centromere<br />

10:00 T13- Giuliano Della Valle (IT), Dissecting Cenp-C function in mammalian centromeres<br />

10.30-11am Coffee break<br />

11.00am -12.15pm Session 4 continued<br />

11:00 T14- W.C. Earnshaw (UK), Genetic analysis of chromosome segregation in vertebrate<br />

cells.<br />

11:30 ST12- C. Desmaze (FR), Chromatin structure and dynamics in the formation of<br />

chromosome aberrations.<br />

11:45 ST13- C. Woo (USA), Long-range Nucleosome Mapping of the HOX Gene Cluster.<br />

12:00 ST14- J. Fajkus (CZ), Minisatellite telomeres in the family Alliacae are lost with<br />

divergence of the genus allium.<br />

12.30 –3.30 pm Poster session with Lunch<br />

3.30pm<br />

6pm<br />

7:30pm<br />

Departure for Rome by turist coach<br />

Guided visit to part of the Musei Capitolini and the Campidoglio (City Hall<br />

of Rome)<br />

Cocktails and dinner on the adjoining Terrazza Caffarelli<br />

3


Chromosome Structural Elements/Rome <strong>2005</strong><br />

02/10/05 Sunday<br />

9-10:30am Session 5: De novo centromeres assembly and Chromosome Engineering<br />

Chair: W.C. Earnshaw (UK)<br />

9:00 T15- Brenda Grimes (USA), Segregation of human artificial chromosomes in mouse<br />

cells.<br />

9:30 T16- T. Voet, (Belgium), Optimisation and exploitation of a chromosomal vector<br />

10:00 ST15- N. Mestrovic (Croatia), The MEL-172 satellite DNA library in parthenogenetic<br />

meloidogyne species: conserved pattern of nucleotide variability along the monomers<br />

11.30-11.00am Coffee break<br />

11.00am -12.30pm Session 5 continued<br />

Chair: Christine Farr (UK)<br />

11:30 T17- H. Masumoto (JPN), Chromatin assemblies required for de novo human artificial<br />

chromosome formation.<br />

12:00 T18- Fiorentina Ascenzioni (IT), Human minichromosomes: expression vectors for<br />

human genes.<br />

12.30-3pm Poster session with Lunch<br />

3.00-4.00pm Lecture: Giorgio Bernardi (IT), Chromatin structure in interphase nuclei of<br />

vertebrates and the formation GC-rich isochores.<br />

4:00-4.30pm Coffee break<br />

4.30-6:00pm session 6: Chromosomes organization and gene evolution<br />

Chair: Giuseppe Novelli (IT)<br />

4:30 T19- M. Cremer (DE), Nuclear architecture in the light of conserved higher order<br />

chromatin arrangements.<br />

5:00 T20- Mariano Rocchi (IT), Centromere repositioning in evolution.<br />

5:30 T21- Novelli Giuseppe (IT), The role of the nuclear envelope in genome organisation.<br />

Closing remarks: Silvia Bacchetti and Giuseppe Novelli<br />

2/10-<strong>2005</strong> or 3/10/05 Departure<br />

4


Chromosome Structural Elements/Rome <strong>2005</strong><br />

Posters*<br />

P1 - C. Auriche (IT), Chronic Chromosome Instability in Humanized Yeast<br />

P2 - C. Azzalin (CH), The human RNA surveillance factors UPF1 and EST1A/SMG6 are<br />

essential for S-phase progression and DNA repair.<br />

P3 - M. Babar (Pakistan), Identification of bacterial blight resistance genes Xa4 in Pakistani rice<br />

germplasm using PCR based markers.<br />

P4 - S. Carrabino (IT), Polyethylenamine/albumin complexes display high transfection<br />

efficiency in confluent and polarized human respiratory epithelial cells.<br />

P5 - I. Draskovic (FR), Molecular mechanisms of alternative lengthening of telomeres (ALT) in<br />

human cancers.<br />

P6 – A. Farsetti (IT), Primary cultures of prostate luminal cells as a model for an integrated<br />

approach to prostate cancer: isolation, characterization and gene profiling.<br />

P7 - M. Gezahagne (Ethiopia), Species distinctiveness between Trifolium quartinianum and<br />

Trifolium steudneri.<br />

P8- C. Keil (DE), Functional interactions of poly(ADP-Ribose)glycohydrolase with PARP-1 and<br />

XRCC1<br />

P9-– C. Lan (Taiwan), Significance of Topoisomerase 2a in association with Her2/neu in breast<br />

cancer management.<br />

P10- S-C. Liang (Taiwan), Chromosomal aberrations in malignant pleural effusion from lung<br />

adenocarcinoma: varying cytogenetic abnormalities detected in relationship to gender and<br />

smoking.<br />

P11 - L-C. Lin (Taiwan), EGFR gene sequence in breast cancer patients in Taiwan.<br />

P12 – C. Mondello (IT), Cellular transformation of telomerase immortalized human fibroblasts.<br />

P13 – B. Mravinac (Croatia), What a difference “junk” DNAs make…..<br />

P14 – V. Petrovic (Croatia), Intricate patterns of sequence divergence and conservation in an<br />

organizationally complex Donax trunculus satellite DNA family.<br />

P15 – G. Piaggio (IT), NF-Y dependent chromatin remodelling in proliferation and<br />

differentiation.<br />

P16 – S. Redon (FR), Protein-protein and protein-RNA interactions mediate the association of<br />

human EST1a with telomerase.<br />

P17 – E. Sykorova (CZ), Plant telomerases synthesizing human type of telomeres.<br />

* Poster will be displayed for the duration of the meeting. Each poster has been assigned a<br />

number according to the list above. Presenting authors are requested to stand alongside their<br />

poster during the poster sessions.<br />

Maximum size of the poster: 1.20cm high x 1.50 width cm<br />

5


Chromosome Structural Elements/Rome <strong>2005</strong><br />

Travelling to Villa Mondragone<br />

From Leonardo da Vinci-Fiumicino Airport<br />

1. Take the Express Train (Leonardo Express) to Rome Termini Station (about E8). The<br />

train leaves every 30 min (7 and 37 min after the hour) and takes about 30 min to reach<br />

the Termini Station.<br />

2. Take the local train to Frascati. Tickets for this train can be bought at the Airport Station.<br />

The train for Frascati leaves every hour beginning at 5:46am. Following trains are at:<br />

6:32am / 7:33am / 8:35am and then 52 min after the hour till 21:52pm.<br />

3. At the Frascati Station take a taxi to Villa Mondragone or Hotel Villa Vecchia.<br />

Notification of where you will be staying will be posted on the site at a later time.<br />

4. Alternatively, take a taxi from the airport to Villa Mondragone or Villa vecchia (about<br />

E60).<br />

Please make sure to discuss the fare at departure.<br />

From Ciampino Airport<br />

1. Take the shuttle bus (leaving every 20 min till 23:30pm) or a taxi to Ciampino Train<br />

Station. From there take the train to Frascati which leaves at: 4:49am / 6:02am / 6:50am/<br />

7:47am / 8.53am / 10:08am and then at 8 min after the hour till 22:08pm.<br />

2. From Frascati Station take a taxi to Villa Mondragone or Hotel Villa Vecchia.<br />

Notification of where you will be staying will be posted on the site at a later time.<br />

3. Alternatively take a taxi from Ciampino Airport to Villa Mondragone or Villa vecchia<br />

(about E25). Please make sure to discuss the fare at departure.<br />

Local Taxi companies<br />

Taxi Frascati: 06/9422500<br />

Alfredo Iacoangeli: Via G. Saragat, 2 00045 Genzano (RM) 328/3911794 06/9397592<br />

Andrea Amore: 338/8888550, 328/3332022, 340/7240146<br />

Migliori Gianni: 349/5860561<br />

6


Chromosome Structural Elements/Rome <strong>2005</strong><br />

Venue<br />

Villa Mondragone<br />

Via Frascati 51, 0040 Monteporzio Catone, Rome<br />

Tel +39 06 9420018<br />

www.villamondragone.it<br />

info@villamondragone.it<br />

Accomodation<br />

Hotel Villa Vecchia,<br />

via Frascati 49, 0040 Monteporzio Catone, Rome<br />

tel +39 06 94340096, fax, +39 069420568<br />

www.villavecchia.it<br />

info@villavecchia.it<br />

Scientific Session<br />

All lectures will be held in Sala degli Svizzeri<br />

Poster will be displayed in Sala Riunioni<br />

Meals and Refreshments<br />

Coffee breaks and lunches will be served in Villa Mondragone<br />

Sponsors:<br />

Università degli Studi di Roma “La Sapienza”<br />

Università degli Studi di Roma Tor Vergata<br />

<strong>Istituto</strong> <strong>Pasteur</strong>-Fondazione Cenci Bolognetti<br />

Ministero dell’Istruzione, dell’Università e della Ricerca<br />

Applied Biosystems<br />

7

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