Baiting Phytophthora spp. from Water: A Southeastern Perspective
Baiting Phytophthora spp. from Water: A Southeastern Perspective
Baiting Phytophthora spp. from Water: A Southeastern Perspective
You also want an ePaper? Increase the reach of your titles
YUMPU automatically turns print PDFs into web optimized ePapers that Google loves.
<strong>Phytophthora</strong> <strong>spp</strong>. in <strong>Water</strong>:<br />
A <strong>Southeastern</strong> <strong>Perspective</strong><br />
Steve Jeffers & Jaesoon Hwang<br />
Clemson University<br />
Clemson, SC
Things to Cover…<br />
• Isolation of <strong>Phytophthora</strong> <strong>spp</strong>. <strong>from</strong> water<br />
• our philosophy after years of “playing”<br />
• Why bait??<br />
• Understanding the baiting process<br />
• Our experience in the southeastern USA<br />
• isolation of <strong>Phytophthora</strong> <strong>spp</strong>. <strong>from</strong> water<br />
• isolation of P. ramorum <strong>from</strong> water
Isolation <strong>from</strong> <strong>Water</strong>:<br />
Our <strong>Perspective</strong><br />
• Isolating <strong>Phytophthora</strong> <strong>spp</strong>. <strong>from</strong> water is a<br />
2-step process: Recovery & Detection<br />
• Step 1: Recovery of propagules <strong>from</strong> water<br />
• using baits or filters<br />
• Step 2: Detection of propagules on filters<br />
or developing colonies in baits<br />
• using selective medium, PCR, ELISA
<strong>Baiting</strong> to Recover <strong>Phytophthora</strong><br />
<strong>spp</strong>. <strong>from</strong> <strong>Water</strong><br />
• Advantages of baiting vs. filtering<br />
• sample larger volume of water<br />
• sample a given waterway over time: 1-3 weeks<br />
• easy, simple, longer self-life<br />
• Disadvantages of baiting vs. filtering<br />
• requires a minimum & constant volume of water<br />
• requires 2 trips to site – added cost & time<br />
• potential to lose samples – theft, intense flow<br />
• not quantitative
Why is <strong>Baiting</strong> Effective?<br />
• Relies on the biology of <strong>Phytophthora</strong> <strong>spp</strong>.<br />
• Zoospores are released & present in water<br />
• Some unique features of zoospores<br />
• negatively geotropic = rise to surface<br />
• chemotactic = attracted to chemicals released<br />
by host plants<br />
• Typical or standard baits<br />
• fruits, leaves (wounded & non-wounded), leaf<br />
pieces, seedlings, cotyledons<br />
• selected to be susceptible to target species
Recovery of <strong>Phytophthora</strong> <strong>spp</strong>.<br />
<strong>from</strong> <strong>Water</strong> by <strong>Baiting</strong><br />
• Allows for the selective isolation of<br />
<strong>Phytophthora</strong> <strong>spp</strong>. <strong>from</strong> water<br />
• Used primarily for static bodies of water<br />
• irrigation ponds, runoff water, lakes<br />
• subsample of moving water: 1 to several liters<br />
• flooded soil and plant parts<br />
• Allows zoospores to seek out baits, encyst,<br />
and infect – all of which takes time!
<strong>Baiting</strong> an irrigation pond
<strong>Baiting</strong> an irrigation pond
Recovery of <strong>Phytophthora</strong> <strong>spp</strong>.<br />
<strong>from</strong> Streams<br />
• In theory, baiting should not be effective!<br />
• negative geotropism & chemotaxis should not<br />
be factors in moving water<br />
• zoospores do not have time to seek out baits,<br />
encyst, and infect<br />
• In reality, though, baiting streams does<br />
work!<br />
• Why??
<strong>Baiting</strong> a stream
<strong>Baiting</strong> a stream
<strong>Baiting</strong> Streams to Recover<br />
<strong>Phytophthora</strong> <strong>spp</strong>.: Some Thoughts<br />
• For infection to occur, zoospores need to<br />
get “stuck” on baits<br />
• like a bug on the windshield – but less lethal!<br />
• What is the “glue”? biofilms, other??<br />
• If this is true…<br />
• recovery of propagules relies mostly on chance<br />
• recovery cannot occur until the “glue” is<br />
present, so propagules present early in the<br />
baiting period will not be recovered<br />
• Food for thought…
Isolating <strong>Phytophthora</strong> <strong>spp</strong>. <strong>from</strong><br />
Streams in the Southeast<br />
• Based on 6 years of experience<br />
• Evaluated recovery methods<br />
• compared baiting & filtration<br />
• compared types of baits<br />
• wounded & non-wounded leaves<br />
• currently evaluating in vitro baiting<br />
• using a subsample of water<br />
• Evaluating detection methods<br />
• comparing culturing & PCR<br />
• comparing types of PCR: real-time vs. nested
Species/Method<br />
(based on 8 months & 5 locations)<br />
Species<br />
Recovery Method<br />
Filter Bait: Wounded Leaf Bait: Non-wounded Leaf<br />
P. cambivora +<br />
P. cinnamomi +<br />
P. citricola + + +<br />
P. citrophthora + + +<br />
P. gonapodyides + + +<br />
P. heveae + +<br />
P. seudosyringae + + +<br />
Group A +<br />
Group B +<br />
Group C + + +<br />
Group F + + +<br />
Group I +<br />
Group J +<br />
Group L +
P. ramorum in <strong>Water</strong> in the<br />
Southeast<br />
• Filtration has been used most often<br />
• baiting is not an option at most retail nurseries<br />
• survey efforts still use baiting and P. ramorum is<br />
being found<br />
• All P. ramorum finds are associated with<br />
nurseries where the pathogen is/was present<br />
• primarily retail nurseries that have received<br />
infected or infested plants
P. ramorum in SE Nurseries<br />
• Since 2006 we have collected samples at<br />
retail and production nurseries in six<br />
<strong>Southeastern</strong> states where P. ramorum has<br />
been found on diseased plants:<br />
• AL, FL, GA, MS, NC, SC<br />
• P. ramorum has been recovered <strong>from</strong> field<br />
soil or water at one or more nurseries in<br />
each state<br />
• In most cases, P. ramorum has been<br />
recovered in multiple years<br />
• even after recommended mitigation treatments
P. ramorum in SE Nurseries<br />
• P. ramorum is present in runoff<br />
water leaving infested nurseries<br />
• So far, P. ramorum has not become<br />
established in natural ecosystems
Run-off water leaving a nursery…
Conclusions<br />
• We need to re-think the baiting process<br />
• can we refine the procedure to be more<br />
effective for streams?<br />
• P. ramorum is present in waterways in the<br />
Southeast and is escaping <strong>from</strong> nurseries<br />
• Infested water at nurseries needs to be<br />
captured and treated before being released