1 BSCI411, Plant Genetics & Molecular Biology Midterm exam ...
1 BSCI411, Plant Genetics & Molecular Biology Midterm exam ...
1 BSCI411, Plant Genetics & Molecular Biology Midterm exam ...
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<strong>BSCI411</strong>, <strong>Plant</strong> <strong>Genetics</strong> & <strong>Molecular</strong> <strong>Biology</strong><br />
<strong>Midterm</strong> <strong>exam</strong>, March 15, 2001<br />
Your Name:________________________ SS#_________________________<br />
1. You are provided with EMS-mutagenized M2 seeds of Arabidopsis. Briefly describe<br />
how you are going to screen for mutants defective in leucine biosynthesis?<br />
2. If you have obtained five such mutants (a1 to a5), how are you going to determine<br />
whether they are recessive or dominant (describe the genetic crosses)?<br />
3. If all five mutants are recessive, you then performed complementation tests to test if<br />
they are allelic (mutation in the same gene) or not allelic. You have obtained<br />
following results from such complementation tests (+: wild-type phenotype in F1,<br />
-: mutant in F1). How many complementation groups are there? How are these five<br />
mutations grouped into different complementation groups?<br />
a1 a2 a3 a4 a5<br />
a1 - + + + -<br />
a2 - - + +<br />
a3 - + +<br />
a4 - +<br />
a5 -<br />
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4. A scientist is studying flower pigment synthesis in petunia. These flowers are usually<br />
dark purple. She has obtained several mutants defective in the pigment biosynthesis<br />
pathway. These mutants are: c1: white flower, p1: red flower; p2; pink flower. She<br />
then tested the epistatic relationship among these mutants by constructing double<br />
mutants. Her results: c1 p1: white, c1 p2: white, p1 p2: pink. Indicate which gene<br />
(C1, P1 or P2) acts first in the pigment biosynthesis pathway, which acts second and<br />
which acts last.<br />
5. Based on the ABC model, describe the floral organ type in each whorl:<br />
Whorls: 1 2 3 4<br />
WT Sepal Petal Stamen Carpel<br />
a mutant:<br />
b muatnt:<br />
c mutant:<br />
bc double mutants:<br />
c mutants carrying a 35S-B transgene:<br />
6. Dr. Franks has mapped a gene named SEUSS to chromosome I of Arabidopsis. He<br />
then try to determine the distance between SEUSS and a chromosome I marker CZ1:<br />
CZ1<br />
SEUSS<br />
seuss was originated in the Ler ecotype and was crossed into a Wild-type plant (Col<br />
ecotype). The F1 progeny of this cross is wild-type in phenotype but is heterozygous for<br />
seuss in genotype. He let the F1 plant self and then isolated DNA from 13 seuss mutant<br />
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plants in F2. CZ1 primers were used to PCR-amplify the CZ1 locus from 13 individual<br />
seuss mutants. The PCR fragment was then diggested with EcoR1 and then run on a 1%<br />
agarose gel. The following is the image from the gel after electrophoreses:<br />
Ler Col 1 2 3 4 5 6 7 8 9 10 11 12 13<br />
___<br />
___ ___ ___ ___<br />
___ ___ ___ ___ ___ ___<br />
___ ___ ___<br />
___<br />
___<br />
_<br />
___<br />
___<br />
_<br />
___<br />
___<br />
_<br />
a. What type of a marker is CZ1? (RFLP? SSLP? CAPS? SNPs?).<br />
b. What is the distance (in % recombination) between SEUSS and CZ1 ? Show your<br />
work.<br />
7. Following is a sequencing gel. What is the DNA sequence? Label 5’ and 3’.<br />
ddA ddG ddC ddT (added to each sequencing reaction)<br />
___<br />
___<br />
___<br />
___<br />
___<br />
___<br />
___<br />
___<br />
___<br />
___<br />
___<br />
___<br />
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8. Indicate differences between following terms. Try to indicate as many difference as<br />
you can (even include advantages/disadvantages, application ect.)<br />
Genomic DNA library vs. cDNA library<br />
Microarray vs. DNA chip<br />
Cis-regulatory elements vs. Trans-acting factors<br />
CAPS vs. RFLP<br />
Promoter vs Enhancer<br />
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