GDR Ecchis - Station Biologique de Roscoff - Portail des applications

GDR Ecchis
Liste des Publications 2003-2007
(encore non exhaustif …)
2007
2006
1. Colaço A., Desbruyeres D. & Guezennec J. 2007. Polar lipid fatty acids as indicators
of trophic associations in a deep sea vent systems community. Marine Ecology, in press
2. Duperron S., Fiala-Medioni A., Caprais J.C., Olu -Le Roy K. & Sibuet M. 2007.
Evidence for chemoautotrophic symbiosis in a Mediterranean cold seep clam (Bivalvia:
Lucinidae): comparative sequence analysis of bacterial16S rRNA,APS reductase and
RubisCO genes. FEMS Microbial Ecology, 59: 64-70.
3. Olu -Le Roy K., Caprais J.-C., Fifis A., Fabri M.-C., Galéron J., Budzinsky H., Le
Ménach K., Khripounoff A., Ondréas H. & Sibuet M. 2007. Cold-seep assemblages
on a giant pockmark off West Africa: spatial patterns and environmental control. Marine
Ecology, in press
4. Ravaux J., Toullec J.Y., Leger N., Lopez P., Gaill F. & Shillito B. 2007. First hsp70
from two hydrothermal vent shrimps, Mirocaris fortunata and Rimicaris exoculata:
characterization and sequence analysis. Gene, 386: 162-172.
1. Andersen A.C., Flores J.F. & Hourdez S. 2006. Comparative branchial plumebiometry
between two extreme ecotypes of the hydrothermal vent tubeworm Ridgeia
piscesae. Canadian Journal of Zoology, 84: 1810-1822.
2. Burreson E.M. & Segonzac M. 2006. Morphological variability of Bathybdella sawyeri
(Hirudinida: Piscicolidae) from hydrothermal vents on the Galápagos Rift and the South
East Pacific Rise. Zootaxa, 1286: 15-21.
3. Company R., Serafim A., Cosson R.P., Camus L., Shillito B., Fiala-Medioni A. &
Bebianno M.J. 2006. The effect of cadmium on antioxidant responses and the
susceptibility to oxidative stress in the hydrothermal vent mussel Bathymodiolus
azoricus. Marine Biology, 148: 817-825.
4. Duperron S., Bergin C., Zielinski F., Blazejak A., Pernthaler A., Mckiness Z.P.,
Dechaine E., Cavanaugh C.M. & Dubilier N. 2006. A dual symbiosis shared by two
mussel species, Bathymodiolus azoricus and Bathymodiolus puteoserpentis (Bivalvia:
Mytilidae), from hydrothermal vents along the northern Mid-Atlantic Ridge. Environ.
Microbiol., 8: 1441-1447.
5. Fabri M.C., Galeron J., Larour M. & Maudire G. 2006. Combining the Biocean
database for deep-sea benthic data with the online Ocean Biogeographic Information
System. Marine Ecology Progress Series, 316: 215-224.
6. Flores J.F. & Hourdez S. 2006. The zinc-mediated sulfide-binding mechanism of
hydrothermal vent tubeworm 400-kDa hemoglobin. Cahiers de Biologie Marine, 47: 371-
377.

2005
7. Hourdez S., Desbruyères D. & Laubier L. 2006. Malacoceros samurai, a new species of
Spionidae (Annelida: Polychaeta) from hydrothermal vent chimney walls on the south
East Pacific Rise. Proc. Biol. Soc. Wash., 119: 592-599.
8. Hourdez S. & Lallier F.H. 2006. Adaptations to hypoxia in hydrothermal-vent and coldseep
invertebrates. Rev Environ Sci Biotechnol, in press
9. Lallier F.H. 2006. Thioautotrophic symbiosis: towards a new step in eukaryote
evolution? Cahiers de Biologie Marine, 47: 391-396.
10.Le Bris N. & Gaill F. 2006. How does the annelid Alvinella pompejana deal with an
extreme hydrothermal environment? Rev Environ Sci Biotechnol, in press
11. Le Bris N., Govenar B., Le Gall C. & Fisher C.R. 2006. Variability of physicochemical
conditions in 9°50'N EPR diffuse flow vent habitats. Marine Chemistry, 98: 167-
182.
12. Lechaire J.P., Frebourg G., Gaill F. & Gros O. 2006. In situ localization of sulphur in
the thioautotrophic symbiotic model Lucina pectinata (Gmelin, 1791) by cryo-EFTEM
microanalysis. Biology of the Cell, 98: 163-170.
13. Marie B., Genard B., Rees J.-F.O. & Zal F. 2006. Effect of ambient oxygen
concentration on activities of enzymatic antioxidant defences and aerobic metabolism in
the hydrothermal vent worm, Paralvinella grasslei. Marine Biology: 1-12.
14. Palacios C., Zbinden M., Baco A.R., Treude T., Smith C.R., Gaill F., Lebaron P. &
Boetius A. 2006. Microbial ecology of deep-sea sunken wood: quantitative
measurements of bacterial biomass and cellulolytic activities. Cahiers De Biologie Marine,
47 (4): 415-420.
15. Ramirez-Llodra E. & Segonzac M. 2006. Reproductive biology of Alvinocaris muricola
(Decapoda: Caridea: Alvinocarididae) from cold seeps in the Congo Basin. Journal of the
Marine Biological Association of the United Kingdom, 86: 1347-1356.
16. Sarrazin J., Walter C., Sarradin P.-M., Brind'amour A., Desbruyères D., Briand P.,
Fabri M.-C., Gaever S.V., Vanreusel A., Bachraty C. & Thiébaut E. 2006.
Community structure and temperature dynamics within a mussel assemblage on the
Southern East Pacific Rise. Cahiers de Biologie Marine, 47: 483-490.
17. Shillito B., Le Bris N., Hourdez S., Ravaux J., Cottin D., Caprais J.-C., Jollivet D.
& Gaill F. 2006. Temperature resistance studies on the deep-sea vent shrimp Mirocaris
fortunata. Journal of Experimental Biology, 209: 945-955.
18. Silberfeld T. & Gros O. 2006. Embryonic development of the tropical bivalve Tivela
mactroides (Born, 1778) (Veneridae : subfamily Meretricinae): a SEM study. Cahiers De
Biologie Marine, 47 (3): 243-251.
19. Stöhr S. & Segonzac M. 2006. Two new genera and species of Ophiuroid
(Echinodermata) from hydrothermal vents in the East Pacific. Species Diversity, 11: 7-32.
20. Zekely J., Gollner S., Van Dover C.L., Govenar B., Le Bris N., Nemeschkal H.L. &
Bright M. 2006. Nematode communities associated with tubeworm and mussel
aggregations on the East Pacific Rise. Cahiers de Biologie Marine, 47: 477-482.
1. Bailly X. & Vinogradov S. 2005. The sulfide binding function of annelid hemoglobins:
relic of an old biosystem? Journal of Inorganic Biochemistry, 99: 142-150.

2. Bebianno M.J., Company R., Serafim A., Camus L., Cosson R.P. & Fiala-Medoni
A. 2005. Antioxidant systems and lipid peroxidation in Bathymodiolus azoricus from Mid-
Atlantic Ridge hydrothermal vent fields. Aquatic Toxicology, 75: 354-373.
3. Boudier T., Lechaire J.P., Frebourg G., Messaoudi C., Mory C., Colliex C., Gaill
F. & Marco S. 2005. A public software for energy filtering transmission electron
tomography (EFTET-J): Application to the study of granular inclusions in bacteria from
Riftia pachyptila. Journal of Structural Biology, 151: 151-159.
4. Cardigos F., Colacao A., Dando P.R., Avila S.P., Sarradin P.-M., Tempera F.,
Conceicao P., Pascoa A. & Serrao Santos R. 2005. Shallow water hydrothermal
vent field fluids and communities of the D. João de Castro Seamount (Azores) Chemical
Geology, 224: 153-168.
5. Causse R., Biscoito M. & Briand P. 2005. First record of the deep-sea eel Ilyophis
saldanhai (Synaphobranchidae, Anguilliformes) from the Pacific Ocean Cybium, 29: 413-
416.
6. Cordes E.E., Hourdez S., Predmore B.L., Redding M.L. & Fisher C.R. 2005.
Succession of hydrocarbon seep communities associated with the long-lived
foundation species Lamellibrachia luymesi. Marine Ecology Progress Series, 305: 17-29.
7. Duperron S., Nadalig T., Caprais J.C., Sibuet M., Fiala-Medioni A., Amann R. &
Dubilier N. 2005. Dual symbiosis in a Bathymodiolus sp mussel from a methane seep on
the Gabon continental margin (South East Atlantic): 16S rRNA phylogeny and
distribution of the symbionts in the gills. Applied and Environmental Microbiology, 71: 1694-
1700.
8. Govenar B., Le Bris N., Gollner S., Glanville J., Aperghis A.B., Hourdez S.P. &
Fisher C.R. 2005. Epifaunal community structure associated with Riftia pachyptila
aggregations in chemically different hydrothermal vent habitats. Marine Ecology - Progress
Series, 305: 67-77.
9. Hahlbeck E., Pospesel M.A., Zal F., Childress J.J. & Felbeck H. 2005. Proposed
nitrate binding by hemoglobin in Riftia pachyptila blood. Deep-Sea Research, 52: 1885-1895.
10. Hourdez S. & Weber R.E. 2005. Molecular and functional adaptations in deep-sea
hemoglobins. Journal of Inorganic Biochemistry, 99: 130-141.
11. Komai T. & Segonzac M. 2005. A revision of the genus Alvinocaris Williams and Chace
Crustacea: Decapoda: Caridea: Alvinocarididae, with descriptions of a new genus and a
new species of Alvinocaris. Journal of Natural History, 39: 1111-1175.
12. Komai T. & Segonzac M. 2005. Two new species of Nematocarcinus A. Milne-Edwards,
1881 (Crustacea, Decapoda, Caridea, Nematocarcinidae) from hydrothermal vents on
the North and South East Pacific Rise. Zoosystema, 27: 343-364.
13. Le Bris N., Zbinden M. & Gaill F. 2005. Processes controlling the physico-chemical
micro-environments associated with Pompeii worms. Deep - Sea Research Part I, 52:
1071-1083.
14. Macpherson E., Jones W. & Segonzac M. 2005. A new squat lobster family of
Galatheoidea (Crustacea, Decapoda, Anomura) from the hydrothermal vents of the
Pacific-Antarctic Ridge. Zoosystema, 27: 709-723.
15. Macpherson E. & Segonzac M. 2005. Species of the genus Munidopsis (Crustacea,
Decapoda, Galatheidae) from the deep Atlantic Ocean, including cold-seep and

2004
hydrothermal vent areas. Zootaxa, 1095: 1-60.
16. Postec A., Le Breton C., Fardeau M.L., Lesongeur F., Pignet P., Quérellou J.,
Ollivier B. & Godfroy A. 2005. Marinitoga hydrogenitolerans sp. nov., a novel member of
the order Thermotogales isolated from a black smoker chimney on the Mid-Atlantic Ridge.
International Journal of Systematic and Evolutionary Microbiology, 55: 1217-1221.
17. Postec A., Pignet P., Cueff-Gauchard V., Schmitt A., Querellou J. & Godfroy A.
2005. Optimisation of growth conditions for continuous culture of the hyperthermophilic
archaeon Thermococcus hydrothermalis and development of sulphur-free defined and
minimal media. Research in Microbiology, 156: 82-87.
18. Postec A., Urios L., Lesongeur F., Ollivier B., Quérellou J. & Godfroy A. 2005.
Continuous enrichment culture and molecular monitoring to investigatethe microbial
diversity of thermophiles inhabiting the deep-sea hydrothermal ecosystems. Current
Microbiology, 50: 138-144.
19. Pradillon F., Le Bris N., Shillito B., Young C.M. & Gaill F. 2005. Influence of
environmental conditions on early development of the hydrothermal vent polychaete
Alvinella pompejana. Journal of Experimental Biology, 208: 1551-1561.
20. Pradillon F., Zbinden M., Mullineaux L.S. & Gaill F. 2005. Colonisation of newlyopened
habitat by a pioneer species, Alvinella pompejana (Polychaeta : Alvinellidae), at
East Pacific Rise vent sites. Marine Ecology Progress Series, 302: 147-157.
21. Sarradin P.-M., Le Bris N., Le Gall C. & Rodier P. 2005. Fe analysis by the ferrozine
method: Adaptation to FIA towards in situ analysis in hydrothermal environment. Talanta,
66: 1131-1138.
22. Stöhr S. & Segonzac M. 2005. Deep-sea ophiuroids (Echinodermata) from reducing
and non-reducing environments in the North Atlantic Ocean. Journal of the marine
biological Association of the United Kingdom, 85: 383-402.
23. Uda K., Tanaka K., Bailly X., Zal F. & Suzuki T. 2005. Phosphagen kinase of the
giant tubeworm Riftia pachyptila. Cloning and expression of cytoplasmic and
mitochondrial isoforms of taurocyamine kinase. Int. J. Biol. Macromol, 37: 54-60.
1. Andersen A.C., Hourdez S., Marie B., Jollivet D., Lallier F.H. & Sibuet M. 2004.
Escarpia southwardae sp nov., a new species of vestimentiferan tubeworm (Annelida,
Siboglinidae) from West African cold seeps. Canadian Journal of Zoology, 82: 980-999.
2. Chausson F., Sanglier S., Leize E., Hagege A., Bridges C.R., Sarradin P.M.,
Shillito B., Lallier F.H. & Zal F. 2004. Respiratory adaptations to the deep-sea
hydrothermal vent environment: the case of Segonzacia mesatlantica, a crab from the Mid-
Atlantic Ridge. Micron, 35: 31-41.
3. Chausson F., Sanglier S., Leize E., Hagège A., Bridges C.R., Sarradin P.M.,
Shillito B., Lallier F.H. & Zal F. 2004. Respiratory adaptations of a deep-sea
hydrothermal vent crab. Micron, 35: 27-29.
4. Hagège A., Baldinger T., Martin-Jouet M., Zal F., Leroy M., Leize E. & Van
Dorsselaer A. 2004. Assessment of the contribution of inductively coupled plasma
mass spectrometry to metalloprotein analysis: a novel approach for studies of
multiproteic complexes. Rapid Communications in Mass Spectrometry, 18: 735-738.

2003
5. Piccino P., Viard F., Sarradin P.M., Lebris N., Le Guen D. & Jollivet D. 2004.
Thermal selection of PGM allozymes in newly founded populations of the thermotolerant
vent polychaete Alvinella pompejana. Proceedings of the Royal Society of London B, 271:
2351-2359.
6. Rousset V., Rouse G.W., Siddall M.E., Tillier A. & Pleijel F. 2004. The phylogenetic
position of Siboglinidae (Annelida) inferred from 18S rRNA, 28S rRNA and
morphological data. Cladistics, 20: 518-533
7. Shillito B., Le Bris N., Gaill F., Rees J.-F. & Zal F. 2004. First access to live
Alvinellas. International Journal of High Pressure Research, 24: 169-172.
8. Tsiroulnikov K., Rezai H., Bonch-Osmolovskaya E., Nedkov P., Gousterova A.,
Cueff V., Godfroy A., Barbier G., Métro F., Chobert J.-M., Clayette P., Dormont
D., Grosclaude J. & Haertlé T. 2004. Hydrolysis of the amyloid prion protein and nonpathogenic
Meat and Bone Meal (MBM) by anaerobic thermophilic prokaryotes and
Streptomyces subsp. Journal of Agricultural and Food Chemistry, 52: 6353-6360.
9. Zbinden M., Le Bris N., Gaill F. & Compère P. 2004. Distribution of bacteria and
associated minerals in the gill chamber of the vent shrimp Rimicaris exoculata and related
biogeochemical processes. Marine Ecology - Progress Series, 284: 237-251.
1. Alain K., Rolland S., Crassous P., Lesongeur F., Zbinden M., Legall C., Godfroy
A., Page A., Juniper S.K., Cambon-Bonavita M.-A., Duchiron F. & Querellou J.
2003. Desulfurobacterium crinifex sp. nov., a novel thermophilic, pinkish-streamer forming,
chemolithoautotrophic bacterium isolated from a Juan de Fuca Ridge hydrothermal vent
and amendment of the genus Desulfurobacterium. Extremophiles, 7: 361-370.
2. Bailly X., Leroy R., Carney S., Collin O., Zal F., Toulmond A. & Jollivet D. 2003.
The loss of the hemoglobin H2S-binding function in annelids from sulfide-free habitats
reveals molecular adaptation driven by Darwinian positive selection. Proceedings of the
National Academy of Sciences of the USA, 100: 5885-5890.
3. Bergquist D.C., Ward T., Cordes E.E., Mcnelis T., Kosoff R., Hourdez S., Carney
R. & Fisher C.R. 2003. Community structure of vestimentiferan-generated habitat
islands from upper Louisiana slope cold seeps. J. Exp. Mar. Bio. Ecol., 289: 197-222.
4. Cambon-Bonavita M.-A., Lesongeur F., Pignet P., Wery N., Lambert C., Godfroy
A., Querellou J. & Barbier G. 2003. Thermococcus atlanticus sp.nov., a
hyperthermophilic Archaeon isolated from a deep-sea hydrothermal vent in he Mid-
Atlantic Ridge. International Journal of Systematic and Evolutionary Microbiology, 7: 101-109.
5. De Cian M.C., Andersen A.C., Bailly X. & Lallier F.H. 2003. Expression and
localization of carbonic anhydrase and ATPases in the symbiotic tubeworm Riftia
pachyptila. Journal of Experimental Biology, 206: 399-409.
6. De Cian M.C., Andersen A.C., Toullec J.Y., Biegala I., Caprais J.C., Shillito B. &
Lallier F.H. 2003. Isolated bacteriocyte cell suspensions from the hydrothermal-vent
tubeworm Riftia pachyptila, a potent tool for cellular physiology in a chemoautotrophic
symbiosis. Marine Biology, 142: 141-151.
7. De Cian M.C., Bailly X., Morales J., Strub J.M., Van Dorsselaer A. & Lallier F.H.
2003. Characterization of carbonic anhydrases from Riftia pachyptila, a symbiotic

invertebrate from deep-sea hydrothermal vents. Proteins Structure Function and Genetics,
51: 327-339.
8. Gardiner S.L. & Hourdez S. 2003. On the occurrence of the vestimentiferan tube worm
Lamellibrachia luymesi van der Land and Nørrevang, 1975 (Annelida: Pogonophora) in
hydrocarbon seep communities in the Gulf of Mexico. Proc. Biol. Soc. Wash., 116: 380-
394.
9. Hanin L., Green B., Zal F. & Vinogradov S. 2003. Mass distributions of a
macromolecular assembly based on electrospray ionization mass spectrometric masses
of the constituent subunits. Journal of Biosciences, 28: 557-568.
10. Hourdez S. & Desbruyères D. 2003. A new species of scale-worm (Polychaeta:
Polynoidae), Levensteiniella iris sp. nov., from the Rainbow and Lucky Strike vent fields
(Mid-Atlantic ridge). Cahiers de Biologie Marine, 44: 13-21.
11. Le Bris N., Sarradin P.-M. & Caprais J.-C. 2003. Contrasted sulphide chemistries in
the environment of 13[deg]N EPR vent fauna. Deep Sea Research Part I: Oceanographic
Research Papers, 50: 737-747.
12. Mcmullin E.R., Hourdez S., Schaeffer S.W. & Fisher C.R. 2003. Phylogeny and
biogeography of deep sea vestimentiferan tubeworms and their bacterial symbionts.
Symbiosis, 34: 1-41.
13. Ravaux J., Gaill F., Le Bris N., Sarradin P.M., Jollivet D. & Shillito B. 2003. Heatshock
response and temperature resistance in the deep-sea vent shrimp Rimicaris
exoculata. Journal of Experimental Biology, 206: 2345-2354.
14. Sanglier S., Leize E., Van Dorsselaer A. & Zal F. 2003. Comparative ESI-MS study of
n2,2 MDa native hemocyanins from deep-sea and shore crabs : from protein oligomeric
state to biotope. Journal of the American Society for Mass Spectrometry, 14: 419-429.
15. Weber R.E., Hourdez S., Knowles F. & Lallier F. 2003. Hemoglobin function in deepsea
and hydrothermal-vent endemic fish: Symenchelis parasitica (Anguillidae) and
Thermarces cerberus (Zoarcidae). Journal of Experimental Biology, 206: 2693-2702.