DGENE Database Summary Sheet (DBSS) - STN International
DGENE Database Summary Sheet (DBSS) - STN International
DGENE Database Summary Sheet (DBSS) - STN International
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BLAST Matrix settings (for option 5.) (cont'd)<br />
7<br />
<strong>DGENE</strong><br />
Matrix Gap Gap Extension<br />
PAM30 7<br />
6<br />
5<br />
10<br />
8<br />
9<br />
PAM70 8<br />
7<br />
6<br />
11<br />
10<br />
9<br />
2<br />
2<br />
2<br />
1<br />
1<br />
1 (default)<br />
2<br />
2<br />
2<br />
1<br />
1 (default)<br />
1<br />
Example: Online GETSIM homology search for a protein<br />
=> run getsim<br />
LDHILQKTERGVRLHPLARTAKVKNEVNSFKAALSSLAKHGEYAPFARLLNLSGVNNLEHGLFPQLSAIA/sqp<br />
RUN GETSIM AT 17:03:06 ON 14 MAY 2008<br />
COPYRIGHT (C) 2008 FIZ KARLSRUHE GMBH<br />
120000 SEQUENCES PROCESSED<br />
........<br />
3190000 SEQUENCES PROCESSED<br />
1415 ANSWERS FOUND ABOVE A THRESHOLD OF 57<br />
QUERY SELF SCORE VALUE IS 443<br />
BEST ANSWER SCORE VALUE IS 443<br />
Similarity<br />
Score<br />
443 |<br />
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222 |<br />
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Answer Count 290 580 870 1160 1450<br />
May 2013
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