Developing 384-plex SNP marker sets for breeding and ... - icrisat

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Resources for SNP genotyping in rice SNP discovery Nipponbare/ 93-11 SNPs (Feltus et al. 2004; 384k SNPs) OryzaSNP resequencing (20 rice varieties; 160k SNPs) Next-gen resequencing (in progress; millions of SNPs) High density genotyping Association genetics 44k SNP chip (S. McCouch et al. Cornell Univ.) Future high density SNP chips Low density genotyping Illumina 1536 (CIRAD) Illumina 1536 (Cornell Univ.) Illumina BeadXpress 96 and 384-plex (IRRI, Cornell, USDA) QTL mapping, marker-assisted breeding, genetic diversity analysis, DNA fingerprinting
IR64 IAC 165 M202 Moroberkan Dom Sufid Cypress Pokkali Aswina Swarna Inia Tocuari OryzaSNP: 160K SNPs detected across 20 varieties McNally et al. 2009 (PNAS) Co 39 Patbyeo Gerdeh Dular Sadu-cho
Page 1 and 2: Developing 384-plex SNP marker sets
Page 3 and 4: SSR markers have some disadvantages
Page 5: Rice sequence has enabled SNP disco
Page 9 and 10: Illumina GoldenGate SNP genotyping
Page 11 and 12: BeadXpress 384-plex SNP sets for ri
Page 13 and 14: Diversity analysis with 384 indica/
Page 15 and 16: Diversity analysis for salinity tol
Page 17 and 18: SNP versus SSR throughput Manual PA
Page 19 and 20: Activities to develop SNP tools for
Page 21 and 22: Relevant informatics tools are stil
Page 23: For further information: • Zhao e

Developing 384-plex SNP marker sets for breeding and ... - icrisat

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