Developing 384-plex SNP marker sets for breeding and ... - icrisat
Developing 384-plex SNP marker sets for breeding and ... - icrisat
Developing 384-plex SNP marker sets for breeding and ... - icrisat
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Resources <strong>for</strong> <strong>SNP</strong> genotyping in rice<br />
<strong>SNP</strong><br />
discovery<br />
Nipponbare/<br />
93-11 <strong>SNP</strong>s<br />
(Feltus et al. 2004;<br />
<strong>384</strong>k <strong>SNP</strong>s)<br />
Oryza<strong>SNP</strong><br />
resequencing<br />
(20 rice varieties;<br />
160k <strong>SNP</strong>s)<br />
Next-gen<br />
resequencing<br />
(in progress;<br />
millions of <strong>SNP</strong>s)<br />
High density<br />
genotyping<br />
Association<br />
genetics<br />
44k <strong>SNP</strong> chip<br />
(S. McCouch et al.<br />
Cornell Univ.)<br />
Future high<br />
density <strong>SNP</strong><br />
chips<br />
Low density<br />
genotyping<br />
Illumina 1536<br />
(CIRAD)<br />
Illumina 1536<br />
(Cornell Univ.)<br />
Illumina BeadXpress<br />
96 <strong>and</strong> <strong>384</strong>-<strong>plex</strong><br />
(IRRI, Cornell, USDA)<br />
QTL mapping, <strong>marker</strong>-assisted <strong>breeding</strong>,<br />
genetic diversity analysis, DNA fingerprinting
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