Developing 384-plex SNP marker sets for breeding and ... - icrisat
Developing 384-plex SNP marker sets for breeding and ... - icrisat Developing 384-plex SNP marker sets for breeding and ... - icrisat
SNPs are now the marker of choice • SNPs are abundant across the genome • Large pools of SNPs can be used to identify sets of polymorphic markers • SNP markers are bi-allelic making allele calling more simple • SNP data from different systems or groups can be easily merged in a database • SNP genotyping can be automated, allowing for rapid, high-throughput marker genotyping SNP locus genomic DNA SNP genotyping with allele specific oligos
Rice sequence has enabled SNP discovery High quality BAC-by-BAC O. sativa japonica (Nipponbare) (< 1 error in 10K bases) International Rice Genome Sequencing Project (IRGSP) 2005 Nature 436:793-800
- Page 1 and 2: Developing 384-plex SNP marker sets
- Page 3: SSR markers have some disadvantages
- Page 7 and 8: IR64 IAC 165 M202 Moroberkan Dom Su
- Page 9 and 10: Illumina GoldenGate SNP genotyping
- Page 11 and 12: BeadXpress 384-plex SNP sets for ri
- Page 13 and 14: Diversity analysis with 384 indica/
- Page 15 and 16: Diversity analysis for salinity tol
- Page 17 and 18: SNP versus SSR throughput Manual PA
- Page 19 and 20: Activities to develop SNP tools for
- Page 21 and 22: Relevant informatics tools are stil
- Page 23: For further information: • Zhao e
Rice sequence has enabled <strong>SNP</strong> discovery<br />
High quality BAC-by-BAC<br />
O. sativa japonica (Nipponbare)<br />
(< 1 error in 10K bases)<br />
International Rice Genome Sequencing Project (IRGSP) 2005 Nature 436:793-800
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