Developing 384-plex SNP marker sets for breeding and ... - icrisat
Developing 384-plex SNP marker sets for breeding and ... - icrisat Developing 384-plex SNP marker sets for breeding and ... - icrisat
Training for marker applications GAMMA Lab—a central facility for research and training: - Training for partners in national agricultural research institutes - Molecular Breeding, Rice: Research to Production courses - Future focus: SNP marker data analysis (March 2011)
For further information: • Zhao et al. 2010 (PLoS ONE 5: e10780) • Illumina 1536 SNP chip on 395 O. sativa accessions • Tung et al. 2010 (RICE, online first) • Review of rice genetic diversity platform • Wright et al. 2010 (Bioinformatics Journal, online first) • ALCHEMY: improved algorithm for SNP allele calling • www.ricediversity.org • Susan McCouch’s diversity projects and data downloads • www.gramene.org • Genetic diversity module with SNP data sets • www.ricesnp.org • Rice SNP consortium: updates on resequencing/SNP chips
- Page 1 and 2: Developing 384-plex SNP marker sets
- Page 3 and 4: SSR markers have some disadvantages
- Page 5 and 6: Rice sequence has enabled SNP disco
- Page 7 and 8: IR64 IAC 165 M202 Moroberkan Dom Su
- Page 9 and 10: Illumina GoldenGate SNP genotyping
- Page 11 and 12: BeadXpress 384-plex SNP sets for ri
- Page 13 and 14: Diversity analysis with 384 indica/
- Page 15 and 16: Diversity analysis for salinity tol
- Page 17 and 18: SNP versus SSR throughput Manual PA
- Page 19 and 20: Activities to develop SNP tools for
- Page 21: Relevant informatics tools are stil
Training <strong>for</strong> <strong>marker</strong> applications<br />
GAMMA Lab—a central facility <strong>for</strong> research <strong>and</strong> training:<br />
- Training <strong>for</strong> partners in national agricultural research institutes<br />
- Molecular Breeding, Rice: Research to Production courses<br />
- Future focus: <strong>SNP</strong> <strong>marker</strong> data analysis (March 2011)
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