Developing 384-plex SNP marker sets for breeding and ... - icrisat
Developing 384-plex SNP marker sets for breeding and ... - icrisat
Developing 384-plex SNP marker sets for breeding and ... - icrisat
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Relevant in<strong>for</strong>matics tools are still needed<br />
Flapjack: http://bioinf.scri.ac.uk/flapjack/<br />
• Select optimal sub<strong>sets</strong> of <strong>SNP</strong>s from large data <strong>sets</strong><br />
• Filter data based on polymorphism rates, allele frequency,<br />
quality scores, distribution across the genome<br />
• Visualize <strong>SNP</strong> haplotypes at genomic regions<br />
• Integrate with gene annotation <strong>and</strong> expression data<br />
• Visualize donor introgressions<br />
• Develop tools to assist molecular <strong>breeding</strong> programs
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